Resource
An integrative TAD catalog in lymphoblastoid cell lines discloses the functional impact of deletions and insertions in human genomes
- First Published December 5, 2024
Method
Assessing and mitigating privacy risks of sparse, noisy genotypes by local alignment to haplotype databases
- First Published December 14, 2023
Research
Dynamic RNA–protein interactions underlie the zebrafish maternal-to-zygotic transition
- First Published April 5, 2017
Research
Pangolin genomes and the evolution of mammalian scales and immunity
- First Published August 10, 2016
Research
The frequent evolutionary birth and death of functional promoters in mouse and human
- First Published July 30, 2015
Resource
Digital expression profiling of the compartmentalized translatome of Purkinje neurons
- First Published June 5, 2014
Resource
The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
- First Published September 5, 2012
Research
Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb
- First Published March 15, 2012
Method
Unamplified cap analysis of gene expression on a single-molecule sequencer
- First Published May 19, 2011
Research
Drosophila melanogaster" > Genome-wide analysis of promoter architecture in Drosophila melanogaster
- First Published December 22, 2010
Method
C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data" > Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data
- First Published December 22, 2010
Research
Discovery of non-ETS gene fusions in human prostate cancer using next-generation RNA sequencing
- First Published October 29, 2010
Method
Analysis of membrane proteins in metagenomics: Networks of correlated environmental features and protein families
- First Published April 29, 2010
Methods
Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries
- First Published January 5, 2010
LETTER
Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions
- First Published June 13, 2007
LETTER
Structured RNAs in the ENCODE selected regions of the human genome
- First Published June 13, 2007
Methods
Mapping of transcription factor binding regions in mammalian cells by ChIP: Comparison of array- and sequencing-based technologies
- First Published June 13, 2007
ARTICLE
The DART classification of unannotated transcription within the ENCODE regions: Associating transcription with known and novel loci
- First Published June 13, 2007
ARTICLE
Integrated analysis of experimental data sets reveals many novel promoters in 1% of the human genome
- First Published June 13, 2007
PERSPECTIVE
What is a gene, post-ENCODE? History and updated definition
- First Published June 13, 2007
Methods
Assessing the performance of different high-density tiling microarray strategies for mapping transcribed regions of the human genome
- First Published November 21, 2006
RESOURCE
Large-Scale Mutagenesis of the Yeast Genome Using a Tn7-Derived Multipurpose Transposon
- First Published October 1, 2004