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Resource

An integrative TAD catalog in lymphoblastoid cell lines discloses the functional impact of deletions and insertions in human genomes

  • Chong Li
  • Marc Jan Bonder
  • Sabriya Syed
  • Matthew Jensen
  • Mark B. Gerstein
  • Michael C. Zody Mark J.P. Chaisson Michael E. Talkowski Tobias Marschall
  • ... [+4 authors] ...,
  • Jan O. Korbel
  • Evan E. Eichler
  • Charles Lee
  • Xinghua Shi
  • First Published December 5, 2024
Method

Assessing and mitigating privacy risks of sparse, noisy genotypes by local alignment to haplotype databases

  • Prashant S. Emani
  • Maya N. Geradi
  • Gamze Gürsoy
  • Monica R. Grasty
  • Andrew Miranker
  • Mark B. Gerstein
  • First Published December 14, 2023
Research

Dynamic RNA–protein interactions underlie the zebrafish maternal-to-zygotic transition

  • Vladimir Despic
  • Mario Dejung
  • Mengting Gu
  • Jayanth Krishnan
  • Jing Zhang
  • Lydia Herzel
  • ... [+1 authors] ...,
  • Korinna Straube
  • Mark B. Gerstein
  • Falk Butter
  • Karla M. Neugebauer
  • First Published April 5, 2017
Research

Pangolin genomes and the evolution of mammalian scales and immunity

  • Siew Woh Choo
  • Mike Rayko
  • Tze King Tan
  • Ranjeev Hari
  • Aleksey Komissarov
  • Wei Yee Wee Andrey A. Yurchenko Sergey Kliver Gaik Tamazian Agostinho Antunes Richard K. Wilson Wesley C. Warren Klaus-Peter Koepfli Patrick Minx Ksenia Krasheninnikova Antoinette Kotze Desire L. Dalton Elaine Vermaak Ian C. Paterson Pavel Dobrynin Frankie Thomas Sitam Jeffrine J. Rovie-Ryan Warren E. Johnson Aini Mohamed Yusoff Shu-Jin Luo Kayal Vizi Karuppannan Gang Fang Deyou Zheng
  • ... [+23 authors] ...,
  • Mark B. Gerstein
  • Leonard Lipovich
  • Stephen J. O'Brien
  • Guat Jah Wong
  • First Published August 10, 2016
Research

C. elegans and humans" > Extreme HOT regions are CpG-dense promoters in C. elegans and humans

  • Ron A.-J. Chen
  • Przemyslaw Stempor
  • Thomas A. Down
  • Eva Zeiser
  • Sky K. Feuer
  • Julie Ahringer
  • First Published March 20, 2014
Resource

C. elegans reveals promoter and enhancer architectures" > The landscape of RNA polymerase II transcription initiation in C. elegans reveals promoter and enhancer architectures

  • Ron A.-J. Chen
  • Thomas A. Down
  • Przemyslaw Stempor
  • Q. Brent Chen
  • Thea A. Egelhofer
  • LaDeana W. Hillier
  • Tess E. Jeffers
  • Julie Ahringer
  • First Published April 2, 2013
Research

Guthrie card methylomics identifies temporally stable epialleles that are present at birth in humans

  • Huriya Beyan
  • Thomas A. Down
  • Sreeram V. Ramagopalan
  • Kristina Uvebrant
  • Anita Nilsson
  • Michelle L. Holland Carolina Gemma Gavin Giovannoni Bernhard O. Boehm George C. Ebers
  • ... [+5 authors] ...,
  • Åke Lernmark
  • Corrado M. Cilio
  • R. David Leslie
  • Vardhman K. Rakyan
  • First Published August 23, 2012
Research

A functional methylome map of ulcerative colitis

  • Robert Häsler
  • Zhe Feng
  • Liselotte Bäckdahl
  • Martina E. Spehlmann
  • Andre Franke
  • Andrew Teschendorff Vardhman K. Rakyan Thomas A. Down Gareth A. Wilson
  • ... [+4 authors] ...,
  • Andrew Feber
  • Stephan Beck
  • Stefan Schreiber
  • Philip Rosenstiel
  • First Published July 23, 2012
Research

Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb

  • Justin Cotney
  • Jing Leng
  • Sunghee Oh
  • Laura E. DeMare
  • Steven K. Reilly
  • Mark B. Gerstein
  • James P. Noonan
  • First Published March 15, 2012
Research

Drosophila predicts DNA methylation and CpG landscapes in other invertebrates" > Comparative methylomics reveals gene-body H3K36me3 in Drosophila predicts DNA methylation and CpG landscapes in other invertebrates

  • Lisa Nanty
  • Guillermo Carbajosa
  • Graham A. Heap
  • Francis Ratnieks
  • David A. van Heel
  • Thomas A. Down
  • Vardhman K. Rakyan
  • First Published September 22, 2011
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