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Resource

An integrative TAD catalog in lymphoblastoid cell lines discloses the functional impact of deletions and insertions in human genomes

  • Chong Li
  • Marc Jan Bonder
  • Sabriya Syed
  • Matthew Jensen
  • Mark B. Gerstein
  • Michael C. Zody Mark J.P. Chaisson Michael E. Talkowski Tobias Marschall
  • ... [+4 authors] ...,
  • Jan O. Korbel
  • Evan E. Eichler
  • Charles Lee
  • Xinghua Shi
  • First Published December 5, 2024
Method

Assessing and mitigating privacy risks of sparse, noisy genotypes by local alignment to haplotype databases

  • Prashant S. Emani
  • Maya N. Geradi
  • Gamze Gürsoy
  • Monica R. Grasty
  • Andrew Miranker
  • Mark B. Gerstein
  • First Published December 14, 2023
Research

Human papillomavirus and the landscape of secondary genetic alterations in oral cancers

  • Maura L. Gillison
  • Keiko Akagi
  • Weihong Xiao
  • Bo Jiang
  • Robert K.L. Pickard
  • Jingfeng Li Benjamin J. Swanson Amit D. Agrawal Mark Zucker Birgit Stache-Crain Anne-Katrin Emde
  • ... [+6 authors] ...,
  • Heather M. Geiger
  • Nicolas Robine
  • Kevin R. Coombes
  • David E. Symer
  • First Published December 18, 2018
Method

taxMaps: comprehensive and highly accurate taxonomic classification of short-read data in reasonable time

  • André Corvelo
  • Wayne E. Clarke
  • Nicolas Robine
  • Michael C. Zody
  • First Published March 27, 2018
Research

Dynamic RNA–protein interactions underlie the zebrafish maternal-to-zygotic transition

  • Vladimir Despic
  • Mario Dejung
  • Mengting Gu
  • Jayanth Krishnan
  • Jing Zhang
  • Lydia Herzel
  • ... [+1 authors] ...,
  • Korinna Straube
  • Mark B. Gerstein
  • Falk Butter
  • Karla M. Neugebauer
  • First Published April 5, 2017
Research

Pangolin genomes and the evolution of mammalian scales and immunity

  • Siew Woh Choo
  • Mike Rayko
  • Tze King Tan
  • Ranjeev Hari
  • Aleksey Komissarov
  • Wei Yee Wee Andrey A. Yurchenko Sergey Kliver Gaik Tamazian Agostinho Antunes Richard K. Wilson Wesley C. Warren Klaus-Peter Koepfli Patrick Minx Ksenia Krasheninnikova Antoinette Kotze Desire L. Dalton Elaine Vermaak Ian C. Paterson Pavel Dobrynin Frankie Thomas Sitam Jeffrine J. Rovie-Ryan Warren E. Johnson Aini Mohamed Yusoff Shu-Jin Luo Kayal Vizi Karuppannan Gang Fang Deyou Zheng
  • ... [+23 authors] ...,
  • Mark B. Gerstein
  • Leonard Lipovich
  • Stephen J. O'Brien
  • Guat Jah Wong
  • First Published August 10, 2016
Resource

Drosophila cell lines" > Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines

  • Jiayu Wen
  • Jaaved Mohammed
  • Diane Bortolamiol-Becet
  • Harrison Tsai
  • Nicolas Robine
  • Jakub O. Westholm Erik Ladewig Qi Dai Katsutomo Okamura Alex S. Flynt Dayu Zhang Justen Andrews Lucy Cherbas
  • ... [+8 authors] ...,
  • Thomas C. Kaufman
  • Peter Cherbas
  • Adam Siepel
  • Eric C. Lai
  • First Published July 1, 2014
Research

Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb

  • Justin Cotney
  • Jing Leng
  • Sunghee Oh
  • Laura E. DeMare
  • Steven K. Reilly
  • Mark B. Gerstein
  • James P. Noonan
  • First Published March 15, 2012
Method

Drosophila melanogaster and Caenorhabditis elegans" > Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans

  • Wei-Jen Chung
  • Phaedra Agius
  • Jakub O. Westholm
  • Michael Chen
  • Katsutomo Okamura
  • Nicolas Robine
  • Christina S. Leslie
  • Eric C. Lai
  • First Published December 22, 2010
Research

Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence" > Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence

  • Eugene Berezikov
  • Nicolas Robine
  • Anastasia Samsonova
  • Jakub O. Westholm
  • Ammar Naqvi
  • Jui-Hung Hung Katsutomo Okamura Qi Dai Diane Bortolamiol-Becet Raquel Martin Yongjun Zhao Phillip D. Zamore Gregory J. Hannon
  • ... [+8 authors] ...,
  • Marco A. Marra
  • Zhiping Weng
  • Norbert Perrimon
  • Eric C. Lai
  • First Published December 22, 2010
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