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Method

Accurate reconstruction of bacterial pan- and core genomes with PEPPAN

  • Zhemin Zhou
  • Jane Charlesworth
  • Mark Achtman
  • First Published October 14, 2020
Resource

Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity" > The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity

  • Zhemin Zhou
  • Nabil-Fareed Alikhan
  • Khaled Mohamed
  • Yulei Fan
  • Mark Achtman
  • Derek Brown Marie Chattaway Tim Dallman Richard Delahay Christian Kornschober Ariane Pietzka Burkhard Malorny Liljana Petrovska Rob Davies Andy Robertson
  • ... [+10 authors] ...,
  • William Tyne
  • François-Xavier Weill
  • Marie Accou-Demartin
  • Nicola Williams
  • First Published December 6, 2019
Method

GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens

  • Zhemin Zhou
  • Nabil-Fareed Alikhan
  • Martin J. Sergeant
  • Nina Luhmann
  • Cátia Vaz
  • Alexandre P. Francisco
  • João André Carriço
  • Mark Achtman
  • First Published July 26, 2018
Resource

lacZ reporter gene expression atlas for 313 adult KOMP mutant mouse lines" > A lacZ reporter gene expression atlas for 313 adult KOMP mutant mouse lines

  • David B. West
  • Ravi K. Pasumarthi
  • Brian Baridon
  • Esi Djan
  • Amanda Trainor
  • Stephen M. Griffey Eric K. Engelhard
  • ... [+2 authors] ...,
  • Jared Rapp
  • Bowen Li
  • Pieter J. de Jong
  • K.C. Kent Lloyd
  • First Published January 15, 2015
Research

Staphylococcus aureus pandemic" > A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic

  • Matthew T.G. Holden
  • Li-Yang Hsu
  • Kevin Kurt
  • Lucy A. Weinert
  • Alison E. Mather
  • Simon R. Harris Birgit Strommenger Franziska Layer Wolfgang Witte Herminia de Lencastre Robert Skov Henrik Westh Helena Žemličková Geoffrey Coombs Angela M. Kearns Robert L.R. Hill Jonathan Edgeworth Ian Gould Vanya Gant Jonathan Cooke Giles F. Edwards Paul R. McAdam Kate E. Templeton Angela McCann Zhemin Zhou Santiago Castillo-Ramírez Edward J. Feil Lyndsey O. Hudson Mark C. Enright Francois Balloux David M. Aanensen Brian G. Spratt J. Ross Fitzgerald
  • ... [+28 authors] ...,
  • Julian Parkhill
  • Mark Achtman
  • Stephen D. Bentley
  • Ulrich Nübel
  • First Published January 8, 2013
Resource

A comprehensive molecular cytogenetic analysis of chromosome rearrangements in gibbons

  • Oronzo Capozzi
  • Lucia Carbone
  • Roscoe R. Stanyon
  • Annamaria Marra
  • Fengtang Yang
  • Christopher W. Whelan
  • Pieter J. de Jong
  • Mariano Rocchi
  • Nicoletta Archidiacono
  • First Published August 14, 2012
Research

Clcn4-2 genomic structure differs between the X locus in Mus spretus and the autosomal locus in Mus musculus: AT motif enrichment on the X" > Clcn4-2 genomic structure differs between the X locus in Mus spretus and the autosomal locus in Mus musculus: AT motif enrichment on the X

  • Di Kim Nguyen
  • Fan Yang
  • Rajinder Kaul
  • Can Alkan
  • Anthony Antonellis
  • Karen F. Friery
  • Baoli Zhu
  • Pieter J. de Jong
  • Christine M. Disteche
  • First Published January 31, 2011
Letter

Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype" > Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype

  • Robert A. Kingsley
  • Chisomo L. Msefula
  • Nicholas R. Thomson
  • Samuel Kariuki
  • Kathryn E. Holt
  • Melita A. Gordon David Harris Louise Clarke Sally Whitehead Vartul Sangal Kevin Marsh Mark Achtman Malcolm E. Molyneux Martin Cormican
  • ... [+9 authors] ...,
  • Julian Parkhill
  • Calman A. MacLennan
  • Robert S. Heyderman
  • Gordon Dougan
  • First Published November 9, 2009
LETTER

Comparative sequence analysis of primate subtelomeres originating from a chromosome fission event

  • M. Katharine Rudd
  • RaeLynn M. Endicott
  • Cynthia Friedman
  • Megan Walker
  • Janet M. Young
  • Kazutoyo Osoegawa
  • Pieter J. de Jong
  • Eric D. Green
  • Barbara J. Trask
  • First Published October 24, 2008
LETTER

The amphioxus genome illuminates vertebrate origins and cephalochordate biology

  • Linda Z. Holland
  • Ricard Albalat
  • Kaoru Azumi
  • Èlia Benito-Gutiérrez
  • Matthew J. Blow
  • Marianne Bronner-Fraser Frederic Brunet Thomas Butts Simona Candiani Larry J. Dishaw David E.K. Ferrier Jordi Garcia-Fernàndez Jeremy J. Gibson-Brown Carmela Gissi Adam Godzik Finn Hallböök Dan Hirose Kazuyoshi Hosomichi Tetsuro Ikuta Hidetoshi Inoko Masanori Kasahara Jun Kasamatsu Takeshi Kawashima Ayuko Kimura Masaaki Kobayashi Zbynek Kozmik Kaoru Kubokawa Vincent Laudet Gary W. Litman Alice C. McHardy Daniel Meulemans Masaru Nonaka Robert P. Olinski Zeev Pancer Len A. Pennacchio Mario Pestarino Jonathan P. Rast Isidore Rigoutsos Marc Robinson-Rechavi Graeme Roch Hidetoshi Saiga Yasunori Sasakura Masanobu Satake Yutaka Satou Michael Schubert Nancy Sherwood Takashi Shiina Naohito Takatori Javier Tello Pavel Vopalensky Shuichi Wada Anlong Xu Yuzhen Ye Keita Yoshida Fumiko Yoshizaki Jr-Kai Yu Qing Zhang Christian M. Zmasek Pieter J. de Jong Kazutoyo Osoegawa
  • ... [+55 authors] ...,
  • Nicholas H. Putnam
  • Daniel S. Rokhsar
  • Noriyuki Satoh
  • Peter W.H. Holland
  • First Published June 18, 2008
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