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Research

Caenorhabditis nematode" > Genetic exchange with an outcrossing sister species causes severe genome-wide dysregulation in a selfing Caenorhabditis nematode

  • Dongying Xie
  • Pohao Ye
  • Yiming Ma
  • Yongbin Li
  • Xiao Liu
  • Peter Sarkies
  • Zhongying Zhao
  • First Published November 9, 2022
Method

Efficient and unique cobarcoding of second-generation sequencing reads from long DNA molecules enabling cost-effective and accurate sequencing, haplotyping, and de novo assembly

  • Ou Wang
  • Robert Chin
  • Xiaofang Cheng
  • Michelle Ka Yan Wu
  • Qing Mao
  • Jingbo Tang Yuhui Sun Ellis Anderson Han K. Lam Dan Chen Yujun Zhou Linying Wang Fei Fan Yan Zou Yinlong Xie Rebecca Yu Zhang Snezana Drmanac Darlene Nguyen Chongjun Xu Christian Villarosa Scott Gablenz Nina Barua Staci Nguyen Wenlan Tian Jia Sophie Liu Jingwan Wang Xiao Liu Xiaojuan Qi Ao Chen He Wang Yuliang Dong Wenwei Zhang Andrei Alexeev Huanming Yang Jian Wang
  • ... [+30 authors] ...,
  • Karsten Kristiansen
  • Xun Xu
  • Radoje Drmanac
  • Brock A. Peters
  • First Published April 2, 2019
Research

Callithrix jacchus genome" > Discovery of a new repeat family in the Callithrix jacchus genome

  • Miriam K. Konkel
  • Brygg Ullmer
  • Erika L. Arceneaux
  • Sreeja Sanampudi
  • Sarah A. Brantley
  • Robert Hubley
  • Arian F.A. Smit
  • Mark A. Batzer
  • First Published February 25, 2016
Research

Whole-genome sequencing identifies recurrent mutations in hepatocellular carcinoma

  • Zhengyan Kan
  • Hancheng Zheng
  • Xiao Liu
  • Shuyu Li
  • Thomas D. Barber
  • Zhuolin Gong Huan Gao Ke Hao Melinda D. Willard Jiangchun Xu Robert Hauptschein Paul A. Rejto Julio Fernandez Guan Wang Qinghui Zhang Bo Wang Ronghua Chen Jian Wang Nikki P. Lee Wei Zhou Zhao Lin Zhiyu Peng Kang Yi Shengpei Chen Lin Li Xiaomei Fan Jie Yang Rui Ye Jia Ju Kai Wang Heather Estrella Shibing Deng Ping Wei Ming Qiu Isabella H. Wulur Jiangang Liu Mariam E. Ehsani Chunsheng Zhang Andrey Loboda Wing Kin Sung Amit Aggarwal Ronnie T. Poon Sheung Tat Fan Jun Wang James Hardwick Christoph Reinhard
  • ... [+41 authors] ...,
  • Hongyue Dai
  • Yingrui Li
  • John M. Luk
  • Mao Mao
  • First Published June 20, 2013
Method

Alu insertions in diverse human populations" > Mobile element scanning (ME-Scan) identifies thousands of novel Alu insertions in diverse human populations

  • David J. Witherspoon
  • Yuhua Zhang
  • Jinchuan Xing
  • W. Scott Watkins
  • Hongseok Ha
  • Mark A. Batzer
  • Lynn B. Jorde
  • First Published April 18, 2013
Perspective

Reading TE leaves: New approaches to the identification of transposable element insertions

  • David A. Ray
  • Mark A. Batzer
  • First Published June 1, 2011
Letter

5′-Transducing SVA retrotransposon groups spread efficiently throughout the human genome

  • Annette Damert
  • Julija Raiz
  • Axel V. Horn
  • Johannes Löwer
  • Hui Wang
  • Jinchuan Xing
  • Mark A. Batzer
  • Roswitha Löwer
  • Gerald G. Schumann
  • First Published August 3, 2009
Letter

Mobile elements create structural variation: Analysis of a complete human genome

  • Jinchuan Xing
  • Yuhua Zhang
  • Kyudong Han
  • Abdel Halim Salem
  • Shurjo K. Sen
  • Chad D. Huff Qiong Zhou
  • ... [+2 authors] ...,
  • Ewen F. Kirkness
  • Samuel Levy
  • Mark A. Batzer
  • Lynn B. Jorde
  • First Published May 13, 2009
LETTER

Monodelphis domestica" > Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica

  • Andrew J. Gentles
  • Matthew J. Wakefield
  • Oleksiy Kohany
  • Wanjun Gu
  • Mark A. Batzer
  • David D. Pollock
  • Jerzy Jurka
  • First Published May 10, 2007
LETTER

Whole-genome comparison of Leu3 binding in vitro and in vivo reveals the importance of nucleosome occupancy in target site selection

  • Xiao Liu
  • Cheol-Koo Lee
  • Joshua A. Granek
  • Neil D. Clarke
  • Jason D. Lieb
  • First Published October 19, 2006
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