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Method

GRIDSS: sensitive and specific genomic rearrangement detection using positional de Bruijn graph assembly

  • Daniel L. Cameron
  • Jan Schröder
  • Jocelyn Sietsma Penington
  • Hongdo Do
  • Ramyar Molania
  • Alexander Dobrovic
  • Terence P. Speed
  • Anthony T. Papenfuss
  • First Published November 2, 2017
Research

Callithrix jacchus genome" > Discovery of a new repeat family in the Callithrix jacchus genome

  • Miriam K. Konkel
  • Brygg Ullmer
  • Erika L. Arceneaux
  • Sreeja Sanampudi
  • Sarah A. Brantley
  • Robert Hubley
  • Arian F.A. Smit
  • Mark A. Batzer
  • First Published February 25, 2016
Method

Alu insertions in diverse human populations" > Mobile element scanning (ME-Scan) identifies thousands of novel Alu insertions in diverse human populations

  • David J. Witherspoon
  • Yuhua Zhang
  • Jinchuan Xing
  • W. Scott Watkins
  • Hongseok Ha
  • Mark A. Batzer
  • Lynn B. Jorde
  • First Published April 18, 2013
Method

Copy-number-aware differential analysis of quantitative DNA sequencing data

  • Mark D. Robinson
  • Dario Strbenac
  • Clare Stirzaker
  • Aaron L. Statham
  • Jenny Song
  • Terence P. Speed
  • Susan J. Clark
  • First Published August 9, 2012
Perspective

Reading TE leaves: New approaches to the identification of transposable element insertions

  • David A. Ray
  • Mark A. Batzer
  • First Published June 1, 2011
Research

AK005651) and contributes to type 1 diabetes susceptibility" > A recombination hotspot leads to sequence variability within a novel gene (AK005651) and contributes to type 1 diabetes susceptibility

  • Iris K.L. Tan
  • Leanne Mackin
  • Nancy Wang
  • Anthony T. Papenfuss
  • Colleen M. Elso
  • Michelle P. Ashton Fiona Quirk Belinda Phipson Melanie Bahlo
  • ... [+4 authors] ...,
  • Terence P. Speed
  • Gordon K. Smyth
  • Grant Morahan
  • Thomas C. Brodnicki
  • First Published November 4, 2010
Method

Evaluation of affinity-based genome-wide DNA methylation data: Effects of CpG density, amplification bias, and copy number variation

  • Mark D. Robinson
  • Clare Stirzaker
  • Aaron L. Statham
  • Marcel W. Coolen
  • Jenny Z. Song
  • Shalima S. Nair
  • Dario Strbenac
  • Terence P. Speed
  • Susan J. Clark
  • First Published November 2, 2010
Letter

5′-Transducing SVA retrotransposon groups spread efficiently throughout the human genome

  • Annette Damert
  • Julija Raiz
  • Axel V. Horn
  • Johannes Löwer
  • Hui Wang
  • Jinchuan Xing
  • Mark A. Batzer
  • Roswitha Löwer
  • Gerald G. Schumann
  • First Published August 3, 2009
Letter

Mobile elements create structural variation: Analysis of a complete human genome

  • Jinchuan Xing
  • Yuhua Zhang
  • Kyudong Han
  • Abdel Halim Salem
  • Shurjo K. Sen
  • Chad D. Huff Qiong Zhou
  • ... [+2 authors] ...,
  • Ewen F. Kirkness
  • Samuel Levy
  • Mark A. Batzer
  • Lynn B. Jorde
  • First Published May 13, 2009
LETTER

Characterization of the opossum immune genome provides insights into the evolution of the mammalian immune system

  • Katherine Belov
  • Claire E. Sanderson
  • Janine E. Deakin
  • Emily S.W. Wong
  • Daniel Assange
  • Kaighin A. McColl Alex Gout Bernard de Bono
  • ... [+3 authors] ...,
  • Alexander D. Barrow
  • Terence P. Speed
  • John Trowsdale
  • Anthony T. Papenfuss
  • First Published May 10, 2007
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