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In memoriam

C. Thomas Caskey (1938–2022)

  • First Published February 17, 2022
In memoriam

Deborah A. Nickerson (1954 –2021)

  • First Published January 24, 2022
Research

Bos taurus reveals pervasiveness of X–Y arms races in mammalian lineages" > Sequence analysis in Bos taurus reveals pervasiveness of X–Y arms races in mammalian lineages

  • First Published November 18, 2020
Research

Macaca mulatta) based on whole-genome sequences" > The population genomics of rhesus macaques (Macaca mulatta) based on whole-genome sequences

  • First Published October 17, 2016
Research

Postmortem genetic screening for the identification, verification, and reporting of genetic variants contributing to the sudden death of the young

  • First Published July 19, 2016
Insight/Outlook

The ethics of conducting molecular autopsies in cases of sudden death in the young

  • First Published July 13, 2016
Research

Callithrix jacchus genome" > Discovery of a new repeat family in the Callithrix jacchus genome

  • First Published February 25, 2016
Research

Exonuclease mutations in DNA polymerase epsilon reveal replication strand specific mutation patterns and human origins of replication

  • First Published September 16, 2014
Resource

D. melanogaster modENCODE transcriptome annotation" > Comparative validation of the D. melanogaster modENCODE transcriptome annotation

  • First Published July 1, 2014
Resource

Drosophila melanogaster Genetic Reference Panel lines" > Natural variation in genome architecture among 205 Drosophila melanogaster Genetic Reference Panel lines

  • First Published April 8, 2014
Method

Alu insertions in diverse human populations" > Mobile element scanning (ME-Scan) identifies thousands of novel Alu insertions in diverse human populations

  • First Published April 18, 2013
Method

An integrative variant analysis pipeline for accurate genotype/haplotype inference in population NGS data

  • First Published January 7, 2013
Resource

Strongylocentrotus purpuratus based on transcriptome analysis" > Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis

  • First Published June 18, 2012
Perspective

Reading TE leaves: New approaches to the identification of transposable element insertions

  • First Published June 1, 2011
Resource

A SNP discovery method to assess variant allele probability from next-generation resequencing data

  • First Published December 17, 2009
Resource

The completion of the Mammalian Gene Collection (MGC)

  • First Published September 18, 2009
Letter

5′-Transducing SVA retrotransposon groups spread efficiently throughout the human genome

  • First Published August 3, 2009
Letter

Mobile elements create structural variation: Analysis of a complete human genome

  • First Published May 13, 2009
LETTER

A sequence-level map of chromosomal breakpoints in the MCF-7 breast cancer cell line yields insights into the evolution of a cancer genome

  • First Published December 3, 2008
LETTER

Mouse let-7 miRNA populations exhibit RNA editing that is constrained in the 5′-seed/ cleavage/anchor regions and stabilize predicted mmu-let-7a:mRNA duplexes

  • First Published July 9, 2008
RESOURCE

28-Way vertebrate alignment and conservation track in the UCSC Genome Browser

  • First Published November 5, 2007
ARTICLE

Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome

  • First Published June 13, 2007
LETTER

Monodelphis domestica" > Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica

  • First Published May 10, 2007
COMMENTARY

Community annotation: Procedures, protocols, and supporting tools

  • First Published October 25, 2006
LETTER

Phylogenomic analysis reveals bees and wasps (Hymenoptera) at the base of the radiation of Holometabolous insects

  • First Published October 25, 2006
ARTICLE

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

  • First Published July 15, 2005
LETTER

Alu amplification" > Under the genomic radar: The Stealth model of Alu amplification

  • First Published May 2, 2005
Methods

Highly multiplexed molecular inversion probe genotyping: Over 10,000 targeted SNPs genotyped in a single tube assay

  • First Published February 1, 2005
Methods

Pooled genomic indexing of rhesus macaque

  • First Published February 1, 2005
ARTICLE

Drosophila pseudoobscura: Chromosomal, gene, and cis-element evolution" > Comparative genome sequencing of Drosophila pseudoobscura: Chromosomal, gene, and cis-element evolution

  • First Published January 3, 2005
LETTER

Alu Mobilization and Polymorphism Among the Human and Chimpanzee Lineages" > Differential Alu Mobilization and Polymorphism Among the Human and Chimpanzee Lineages

  • First Published June 1, 2004
RESOURCE

The Atlas Genome Assembly System

  • First Published April 1, 2004
LETTER

Genomic Analysis of the Nuclear Receptor Family: New Insights Into Structure, Regulation, and Evolution From the Rat Genome

  • First Published April 1, 2004
Methods

Identification of Rat Genes by TWINSCAN Gene Prediction, RT–PCR, and Direct Sequencing

  • First Published April 1, 2004
Methods

Dynamic Building of a BAC Clone Tiling Path for the Rat Genome Sequencing Project

  • First Published April 1, 2004
LETTER

Alu Insertion Polymorphisms" > Genetic Variation Among World Populations: Inferences From 100 Alu Insertion Polymorphisms

  • First Published June 12, 2003
LETTER

Y Chromosome STR Haplotypes and the Genetic Structure of U.S. Populations of African, European, and Hispanic Ancestry

  • First Published April 1, 2003
REVIEW

Mammalian Retroelements

  • First Published October 1, 2002
LETTER

Active Alu Element “A-Tails”: Size Does Matter

  • First Published August 21, 2002
LETTER

Patterns of Human Diversity, within and among Continents, Inferred from Biallelic DNA Polymorphisms

  • First Published April 1, 2002
LETTER

Comparing Vertebrate Whole-Genome Shotgun Reads to the Human Genome

  • First Published November 1, 2001
PERSPECTIVE

A Clone-Array Pooled Shotgun Strategy for Sequencing Large Genomes

  • First Published October 1, 2001
LETTER

Genetic Evidence on the Origins of Indian Caste Populations

  • First Published May 8, 2001
ARTICLE

Potential Gene Conversion and Source Genes for Recently Integrated Alu Elements

  • First Published October 1, 2000
LETTER

Reading between the LINEs: Human Genomic Variation Induced by LINE-1 Retrotransposition

  • First Published October 1, 2000
GENOME METHODS

Analysis of the Quality and Utility of Random Shotgun Sequencing at Low Redundancies

  • First Published October 1, 1998
RESEARCH

Comparative Sequence Analysis of a Gene-Rich Cluster at Human Chromosome 12p13 and its Syntenic Region in Mouse Chromosome 6

  • First Published January 1, 1998
LETTER

AluInsertion Polymorphisms and Human Evolution: Evidence for a Larger Population Size in Africa " > AluInsertion Polymorphisms and Human Evolution: Evidence for a Larger Population Size in Africa

  • First Published November 1, 1997
INSIGHT/OUTLOOK

Modeling Human Evolution—To Tree or Not to Tree?

  • First Published October 1, 1997
LETTER

SNRPN Promoter: In Vitro Methylation Abolishes Promoter Activity" > Sequencing and Functional Analysis of the SNRPN Promoter: In Vitro Methylation Abolishes Promoter Activity

  • First Published June 1, 1997
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