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Research

Callithrix jacchus genome" > Discovery of a new repeat family in the Callithrix jacchus genome

  • Miriam K. Konkel
  • Brygg Ullmer
  • Erika L. Arceneaux
  • Sreeja Sanampudi
  • Sarah A. Brantley
  • Robert Hubley
  • Arian F.A. Smit
  • Mark A. Batzer
  • First Published February 25, 2016
Method

Alu insertions in diverse human populations" > Mobile element scanning (ME-Scan) identifies thousands of novel Alu insertions in diverse human populations

  • David J. Witherspoon
  • Yuhua Zhang
  • Jinchuan Xing
  • W. Scott Watkins
  • Hongseok Ha
  • Mark A. Batzer
  • Lynn B. Jorde
  • First Published April 18, 2013
Resource

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis

  • Andrea Pauli
  • Eivind Valen
  • Michael F. Lin
  • Manuel Garber
  • Nadine L. Vastenhouw
  • Joshua Z. Levin Lin Fan
  • ... [+2 authors] ...,
  • Albin Sandelin
  • John L. Rinn
  • Aviv Regev
  • Alexander F. Schier
  • First Published November 22, 2011
Research

Drosophila and other metazoa" > Evidence of abundant stop codon readthrough in Drosophila and other metazoa

  • Irwin Jungreis
  • Michael F. Lin
  • Rebecca Spokony
  • Clara S. Chan
  • Nicolas Negre
  • Alec Victorsen
  • Kevin P. White
  • Manolis Kellis
  • First Published October 12, 2011
Method

Locating protein-coding sequences under selection for additional, overlapping functions in 29 mammalian genomes

  • Michael F. Lin
  • Pouya Kheradpour
  • Stefan Washietl
  • Brian J. Parker
  • Jakob S. Pedersen
  • Manolis Kellis
  • First Published October 12, 2011
Perspective

Reading TE leaves: New approaches to the identification of transposable element insertions

  • David A. Ray
  • Mark A. Batzer
  • First Published June 1, 2011
Letter

5′-Transducing SVA retrotransposon groups spread efficiently throughout the human genome

  • Annette Damert
  • Julija Raiz
  • Axel V. Horn
  • Johannes Löwer
  • Hui Wang
  • Jinchuan Xing
  • Mark A. Batzer
  • Roswitha Löwer
  • Gerald G. Schumann
  • First Published August 3, 2009
Resource

The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes

  • Kim D. Pruitt
  • Jennifer Harrow
  • Rachel A. Harte
  • Craig Wallin
  • Mark Diekhans
  • Donna R. Maglott Steve Searle Catherine M. Farrell Jane E. Loveland Barbara J. Ruef Elizabeth Hart Marie-Marthe Suner Melissa J. Landrum Bronwen Aken Sarah Ayling Robert Baertsch Julio Fernandez-Banet Joshua L. Cherry Val Curwen Michael DiCuccio Manolis Kellis Jennifer Lee Michael F. Lin Michael Schuster Andrew Shkeda Clara Amid Garth Brown Oksana Dukhanina Adam Frankish Jennifer Hart Bonnie L. Maidak Jonathan Mudge Michael R. Murphy Terence Murphy Jeena Rajan Bhanu Rajput Lillian D. Riddick Catherine Snow Charles Steward David Webb Janet A. Weber Laurens Wilming Wenyu Wu Ewan Birney David Haussler
  • ... [+40 authors] ...,
  • Tim Hubbard
  • James Ostell
  • Richard Durbin
  • David Lipman
  • First Published June 4, 2009
Letter

Mobile elements create structural variation: Analysis of a complete human genome

  • Jinchuan Xing
  • Yuhua Zhang
  • Kyudong Han
  • Abdel Halim Salem
  • Shurjo K. Sen
  • Chad D. Huff Qiong Zhou
  • ... [+2 authors] ...,
  • Ewen F. Kirkness
  • Samuel Levy
  • Mark A. Batzer
  • Lynn B. Jorde
  • First Published May 13, 2009
12 | Genomes/Letter

Drosophila melanogaster using 12 fly genomes" > Revisiting the protein-coding gene catalog of Drosophila melanogaster using 12 fly genomes

  • Michael F. Lin
  • Joseph W. Carlson
  • Madeline A. Crosby
  • Beverley B. Matthews
  • Charles Yu
  • Soo Park Kenneth H. Wan Andrew J. Schroeder L. Sian Gramates Susan E. St. Pierre Margaret Roark Kenneth L. Wiley Rob J. Kulathinal Peili Zhang Kyl V. Myrick
  • ... [+10 authors] ...,
  • Jerry V. Antone
  • Susan E. Celniker
  • William M. Gelbart
  • Manolis Kellis
  • First Published November 7, 2007
LETTER

Monodelphis domestica" > Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica

  • Andrew J. Gentles
  • Matthew J. Wakefield
  • Oleksiy Kohany
  • Wanjun Gu
  • Mark A. Batzer
  • David D. Pollock
  • Jerzy Jurka
  • First Published May 10, 2007
LETTER

Alu amplification" > Under the genomic radar: The Stealth model of Alu amplification

  • Kyudong Han
  • Jinchuan Xing
  • Hui Wang
  • Dale J. Hedges
  • Randall K. Garber
  • Richard Cordaux
  • Mark A. Batzer
  • First Published May 2, 2005
LETTER

Alu Mobilization and Polymorphism Among the Human and Chimpanzee Lineages" > Differential Alu Mobilization and Polymorphism Among the Human and Chimpanzee Lineages

  • Dale J. Hedges
  • Pauline A. Callinan
  • Richard Cordaux
  • Jinchuan Xing
  • Erin Barnes
  • Mark A. Batzer
  • First Published June 1, 2004
LETTER

Alu Insertion Polymorphisms" > Genetic Variation Among World Populations: Inferences From 100 Alu Insertion Polymorphisms

  • W. Scott Watkins
  • Alan R. Rogers
  • Christopher T. Ostler
  • Steve Wooding
  • Michael J. Bamshad
  • Anna-Marie E. Brassington Marion L. Carroll Son V. Nguyen Jerilyn A. Walker B.V. Ravi Prasad
  • ... [+5 authors] ...,
  • P. Govinda Reddy
  • Pradipta K. Das
  • Mark A. Batzer
  • Lynn B. Jorde
  • First Published June 12, 2003
LETTER

Y Chromosome STR Haplotypes and the Genetic Structure of U.S. Populations of African, European, and Hispanic Ancestry

  • Manfred Kayser
  • Silke Brauer
  • Hiltrud Schädlich
  • Mechthild Prinz
  • Mark A. Batzer
  • Peter A. Zimmerman
  • B. A. Boatin
  • Mark Stoneking
  • First Published April 1, 2003
REVIEW

Mammalian Retroelements

  • Prescott L. Deininger
  • Mark A. Batzer
  • First Published October 1, 2002
LETTER

Active Alu Element “A-Tails”: Size Does Matter

  • Astrid M. Roy-Engel
  • Abdel-Halim Salem
  • Oluwatosin O. Oyeniran
  • Lisa Deininger
  • Dale J. Hedges
  • Gail E. Kilroy
  • Mark A. Batzer
  • Prescott L. Deininger
  • First Published August 21, 2002
LETTER

Patterns of Human Diversity, within and among Continents, Inferred from Biallelic DNA Polymorphisms

  • Chiara Romualdi
  • David Balding
  • Ivane S. Nasidze
  • Gregory Risch
  • Myles Robichaux
  • Stephen T. Sherry
  • Mark Stoneking
  • Mark A. Batzer
  • Guido Barbujani
  • First Published April 1, 2002
LETTER

Genetic Evidence on the Origins of Indian Caste Populations

  • Michael Bamshad
  • Toomas Kivisild
  • W. Scott Watkins
  • Mary E. Dixon
  • Chris E. Ricker
  • Baskara B. Rao J. Mastan Naidu B.V. Ravi Prasad P. Govinda Reddy Arani Rasanayagam Surinder S. Papiha Richard Villems Alan J. Redd Michael F. Hammer
  • ... [+9 authors] ...,
  • Son V. Nguyen
  • Marion L. Carroll
  • Mark A. Batzer
  • Lynn B. Jorde
  • First Published May 8, 2001
LETTER

Reading between the LINEs: Human Genomic Variation Induced by LINE-1 Retrotransposition

  • Fang-miin Sheen
  • Stephen T. Sherry
  • Gregory M. Risch
  • Myles Robichaux
  • Ivane Nasidze
  • Mark Stoneking
  • Mark A. Batzer
  • Gary D. Swergold
  • First Published October 1, 2000
ARTICLE

Potential Gene Conversion and Source Genes for Recently Integrated Alu Elements

  • Astrid M. Roy
  • Marion L. Carroll
  • Son V. Nguyen
  • Abdel-Halim Salem
  • Michael Oldridge
  • Andrew O. M. Wilkie
  • Mark A. Batzer
  • Prescott L. Deininger
  • First Published October 1, 2000
LETTER

AluInsertion Polymorphisms and Human Evolution: Evidence for a Larger Population Size in Africa " > AluInsertion Polymorphisms and Human Evolution: Evidence for a Larger Population Size in Africa

  • Mark Stoneking
  • Jennifer J. Fontius
  • Stephanie L. Clifford
  • Himla Soodyall
  • Santosh S. Arcot
  • Nilmani Saha
  • ... [+1 authors] ...,
  • Trefor Jenkins
  • Mohammad A. Tahir
  • Prescott L. Deininger
  • Mark A. Batzer
  • First Published November 1, 1997
INSIGHT/OUTLOOK

Modeling Human Evolution—To Tree or Not to Tree?

  • Stephen T. Sherry
  • Mark A. Batzer
  • First Published October 1, 1997
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