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Resource

GenomeVIP: a cloud platform for genomic variant discovery and interpretation

R. Jay Mashl
Adam D. Scott
Kuan-lin Huang
Matthew A. Wyczalkowski
Christopher J. Yoon
Beifang Niu Erin DeNardo Venkata D. Yellapantula Robert E. Handsaker Ken Chen Daniel C. Koboldt Kai Ye
... [+7 authors] ...,
David Fenyö
Benjamin J. Raphael
Michael C. Wendl
Li Ding

First Published May 18, 2017

Research

Callithrix jacchus genome" > Discovery of a new repeat family in the Callithrix jacchus genome

Miriam K. Konkel
Brygg Ullmer
Erika L. Arceneaux
Sreeja Sanampudi
Sarah A. Brantley
Robert Hubley
Arian F.A. Smit
Mark A. Batzer

First Published February 25, 2016

Research

Characteristics of de novo structural changes in the human genome

Wigard P. Kloosterman
Laurent C. Francioli
Fereydoun Hormozdiari
Tobias Marschall
Jayne Y. Hehir-Kwa
Abdel Abdellaoui Eric-Wubbo Lameijer Matthijs H. Moed Vyacheslav Koval Ivo Renkens Markus J. van Roosmalen Pascal Arp Lennart C. Karssen Bradley P. Coe Robert E. Handsaker Eka D. Suchiman Edwin Cuppen Djie Tjwan Thung Mitch McVey Michael C. Wendl André Uitterlinden Cornelia M. van Duijn Morris A. Swertz Cisca Wijmenga GertJan B. van Ommen P. Eline Slagboom Dorret I. Boomsma Alexander Schönhuth Evan E. Eichler Paul I.W. de Bakker Kai Ye Victor Guryev André Uitterlinden Cornelia M. van Duijn Morris A. Swertz Cisca Wijmenga GertJan B. van Ommen P. Eline Slagboom Dorret I. Boomsma Alexander Schönhuth
... [+35 authors] ...,
Evan E. Eichler
Paul I.W. de Bakker
Kai Ye
Victor Guryev

First Published April 16, 2015

Method

Alu insertions in diverse human populations" > Mobile element scanning (ME-Scan) identifies thousands of novel Alu insertions in diverse human populations

David J. Witherspoon
Yuhua Zhang
Jinchuan Xing
W. Scott Watkins
Hongseok Ha
Mark A. Batzer
Lynn B. Jorde

First Published April 18, 2013

Resource

MuSiC: Identifying mutational significance in cancer genomes

Nathan D. Dees
Qunyuan Zhang
Cyriac Kandoth
Michael C. Wendl
William Schierding
Daniel C. Koboldt Thomas B. Mooney Matthew B. Callaway
... [+3 authors] ...,
David Dooling
Elaine R. Mardis
Richard K. Wilson
Li Ding

First Published July 3, 2012

Perspective

Reading TE leaves: New approaches to the identification of transposable element insertions

David A. Ray
Mark A. Batzer

First Published June 1, 2011

Letter

5′-Transducing SVA retrotransposon groups spread efficiently throughout the human genome

Annette Damert
Julija Raiz
Axel V. Horn
Johannes Löwer
Hui Wang
Jinchuan Xing
Mark A. Batzer
Roswitha Löwer
Gerald G. Schumann

First Published August 3, 2009

Letter

Mobile elements create structural variation: Analysis of a complete human genome

Jinchuan Xing
Yuhua Zhang
Kyudong Han
Abdel Halim Salem
Shurjo K. Sen
Chad D. Huff Qiong Zhou
... [+2 authors] ...,
Ewen F. Kirkness
Samuel Levy
Mark A. Batzer
Lynn B. Jorde

First Published May 13, 2009

LETTER

Monodelphis domestica" > Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica

Andrew J. Gentles
Matthew J. Wakefield
Oleksiy Kohany
Wanjun Gu
Mark A. Batzer
David D. Pollock
Jerzy Jurka

First Published May 10, 2007

RESOURCE

PolyScan: An automatic indel and SNP detection approach to the analysis of human resequencing data

Ken Chen
Michael D. McLellan
Li Ding
Michael C. Wendl
Yumi Kasai
Richard K. Wilson
Elaine R. Mardis

First Published April 6, 2007

LETTER

Alu amplification" > Under the genomic radar: The Stealth model of Alu amplification

Kyudong Han
Jinchuan Xing
Hui Wang
Dale J. Hedges
Randall K. Garber
Richard Cordaux
Mark A. Batzer

First Published May 2, 2005

LETTER

Alu Mobilization and Polymorphism Among the Human and Chimpanzee Lineages" > Differential Alu Mobilization and Polymorphism Among the Human and Chimpanzee Lineages

Dale J. Hedges
Pauline A. Callinan
Richard Cordaux
Jinchuan Xing
Erin Barnes
Mark A. Batzer

First Published June 1, 2004

LETTER

Alu Insertion Polymorphisms" > Genetic Variation Among World Populations: Inferences From 100 Alu Insertion Polymorphisms

W. Scott Watkins
Alan R. Rogers
Christopher T. Ostler
Steve Wooding
Michael J. Bamshad
Anna-Marie E. Brassington Marion L. Carroll Son V. Nguyen Jerilyn A. Walker B.V. Ravi Prasad
... [+5 authors] ...,
P. Govinda Reddy
Pradipta K. Das
Mark A. Batzer
Lynn B. Jorde

First Published June 12, 2003

LETTER

Y Chromosome STR Haplotypes and the Genetic Structure of U.S. Populations of African, European, and Hispanic Ancestry

Manfred Kayser
Silke Brauer
Hiltrud Schädlich
Mechthild Prinz
Mark A. Batzer
Peter A. Zimmerman
B. A. Boatin
Mark Stoneking

First Published April 1, 2003

METHODS

Generalized Gap Model for Bacterial Artificial Chromosome Clone Fingerprint Mapping and Shotgun Sequencing

Michael C. Wendl
Robert H. Waterston

First Published December 1, 2002

REVIEW

Mammalian Retroelements

Prescott L. Deininger
Mark A. Batzer

First Published October 1, 2002

LETTER

Active Alu Element “A-Tails”: Size Does Matter

Astrid M. Roy-Engel
Abdel-Halim Salem
Oluwatosin O. Oyeniran
Lisa Deininger
Dale J. Hedges
Gail E. Kilroy
Mark A. Batzer
Prescott L. Deininger

First Published August 21, 2002

LETTER

Patterns of Human Diversity, within and among Continents, Inferred from Biallelic DNA Polymorphisms

Chiara Romualdi
David Balding
Ivane S. Nasidze
Gregory Risch
Myles Robichaux
Stephen T. Sherry
Mark Stoneking
Mark A. Batzer
Guido Barbujani

First Published April 1, 2002

LETTER

Genetic Evidence on the Origins of Indian Caste Populations

Michael Bamshad
Toomas Kivisild
W. Scott Watkins
Mary E. Dixon
Chris E. Ricker
Baskara B. Rao J. Mastan Naidu B.V. Ravi Prasad P. Govinda Reddy Arani Rasanayagam Surinder S. Papiha Richard Villems Alan J. Redd Michael F. Hammer
... [+9 authors] ...,
Son V. Nguyen
Marion L. Carroll
Mark A. Batzer
Lynn B. Jorde

First Published May 8, 2001

METHODS

Theories and Applications for Sequencing Randomly Selected Clones

Michael C. Wendl
Marco A. Marra
LaDeana W. Hillier
Asif T. Chinwalla
Richard K. Wilson
Robert H. Waterston

First Published January 18, 2001

ARTICLE

Potential Gene Conversion and Source Genes for Recently Integrated Alu Elements

Astrid M. Roy
Marion L. Carroll
Son V. Nguyen
Abdel-Halim Salem
Michael Oldridge
Andrew O. M. Wilkie
Mark A. Batzer
Prescott L. Deininger

First Published October 1, 2000

LETTER

Reading between the LINEs: Human Genomic Variation Induced by LINE-1 Retrotransposition

Fang-miin Sheen
Stephen T. Sherry
Gregory M. Risch
Myles Robichaux
Ivane Nasidze
Mark Stoneking
Mark A. Batzer
Gary D. Swergold

First Published October 1, 2000

GENOME METHODS

Automated Sequence Preprocessing in a Large-Scale Sequencing Environment

Michael C. Wendl
Simon Dear
Dave Hodgson
LaDeana Hillier

First Published September 1, 1998

LETTER

AluInsertion Polymorphisms and Human Evolution: Evidence for a Larger Population Size in Africa " > AluInsertion Polymorphisms and Human Evolution: Evidence for a Larger Population Size in Africa

Mark Stoneking
Jennifer J. Fontius
Stephanie L. Clifford
Himla Soodyall
Santosh S. Arcot
Nilmani Saha
... [+1 authors] ...,
Trefor Jenkins
Mohammad A. Tahir
Prescott L. Deininger
Mark A. Batzer

First Published November 1, 1997

INSIGHT/OUTLOOK

Modeling Human Evolution—To Tree or Not to Tree?

Stephen T. Sherry
Mark A. Batzer

First Published October 1, 1997