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Research

Single-cell template strand sequencing reveals culture-induced chromosomal instability in a gibbon cell line

  • First Published May 4, 2026
Resource

A high-resolution map of small-scale inversions in the gibbon genome

  • First Published September 30, 2022
Resource

Single-cell strand sequencing of a macaque genome reveals multiple nested inversions and breakpoint reuse during primate evolution

  • First Published October 22, 2020
Resource

A limited set of transcriptional programs define major cell types

  • First Published July 29, 2020
Resource

Dynamics of microRNA expression during mouse prenatal development

  • First Published October 23, 2019
Resource

Inversion variants in human and primate genomes

  • First Published May 18, 2018
Corrigendum

Corrigendum: The evolution of African great ape subtelomeric heterochromatin and the fusion of human chromosome 2

  • First Published September 1, 2017
Research

Interchromosomal core duplicons drive both evolutionary instability and disease susceptibility of the Chromosome 8p23.1 region

  • First Published October 7, 2016
Research

Hominoid fission of chromosome 14/15 and the role of segmental duplications

  • First Published September 27, 2013
Research

Evolution and diversity of copy number variation in the great ape lineage

  • First Published July 3, 2013
Research

De novo DNA demethylation and noncoding transcription define active intergenic regulatory elements

  • First Published June 28, 2013
Research

LRRC37 gene family" > Evolutionary dynamism of the primate LRRC37 gene family

  • First Published October 11, 2012
Research

Understanding transcriptional regulation by integrative analysis of transcription factor binding data

  • First Published September 5, 2012
Resource

The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

  • First Published September 5, 2012
Research

Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs

  • First Published September 5, 2012
Method

High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression

  • First Published August 30, 2012
Research

The evolution of African great ape subtelomeric heterochromatin and the fusion of human chromosome 2

  • First Published March 14, 2012
Resource

Copy number variation of individual cattle genomes using next-generation sequencing

  • First Published February 2, 2012
Resource

Synthetic spike-in standards for RNA-seq experiments

  • First Published August 4, 2011
Research

Gorilla genome structural variation reveals evolutionary parallelisms with chimpanzee

  • First Published June 17, 2011
Resource

Drosophila cell lines" > The transcriptional diversity of 25 Drosophila cell lines

  • First Published December 22, 2010
Research

Alu repeat discovery and characterization within human genomes" > Alu repeat discovery and characterization within human genomes

  • First Published December 3, 2010
Method

Genome-wide characterization of centromeric satellites from multiple mammalian genomes

  • First Published November 16, 2010
Resource

Analysis of copy number variations among diverse cattle breeds

  • First Published March 8, 2010
Resource

The genomic architecture of segmental duplications and associated copy number variants in dogs

  • First Published January 7, 2009
LETTER

Sequencing human–gibbon breakpoints of synteny reveals mosaic new insertions at rearrangement sites

  • First Published November 24, 2008
LETTER

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

  • First Published February 7, 2008
LETTER

Whole-genome maps of USF1 and USF2 binding and histone H3 acetylation reveal new aspects of promoter structure and candidate genes for common human disorders

  • First Published January 29, 2008
ARTICLE

The DART classification of unannotated transcription within the ENCODE regions: Associating transcription with known and novel loci

  • First Published June 13, 2007
ARTICLE

Prominent use of distal 5′ transcription start sites and discovery of a large number of additional exons in ENCODE regions

  • First Published June 13, 2007
LETTER

Pseudogenes in the ENCODE regions: Consensus annotation, analysis of transcription, and evolution

  • First Published June 13, 2007
LETTER

Structured RNAs in the ENCODE selected regions of the human genome

  • First Published June 13, 2007
PERSPECTIVE

Origin of phenotypes: Genes and transcripts

  • First Published June 13, 2007
LETTER

A preliminary comparative analysis of primate segmental duplications shows elevated substitution rates and a great-ape expansion of intrachromosomal duplications

  • First Published April 10, 2006
LETTER

A genome-wide survey of structural variation between human and chimpanzee

  • First Published September 16, 2005
Methods

Examples of the complex architecture of the human transcriptome revealed by RACE and high-density tiling arrays

  • First Published July 5, 2005
LETTER

Punctuated duplication seeding events during the evolution of human chromosome 2p11

  • First Published June 17, 2005
LETTER

Recurrent Sites for New Centromere Seeding

  • First Published September 1, 2004
ARTICLE

Analysis of Segmental Duplications and Genome Assembly in the Mouse

  • First Published May 3, 2004
ARTICLE

Novel RNAs Identified From an In-Depth Analysis of the Transcriptome of Human Chromosomes 21 and 22

  • First Published March 1, 2004
LETTER

Complex Events in the Evolution of the Human Pseudoautosomal Region 2 (PAR2)

  • First Published January 14, 2003
LETTER

Neocentromeres in 15q24-26 Map to Duplicons Which Flanked an Ancestral Centromere in 15q25

  • First Published January 1, 2003
LETTER

KIAA0187 Were Created through Independent Pericentromeric-Directed and Chromosome-Specific Duplication Mechanisms" > Human Paralogs of KIAA0187 Were Created through Independent Pericentromeric-Directed and Chromosome-Specific Duplication Mechanisms

  • First Published January 1, 2002
METHODS

Flexible Use of High-Density Oligonucleotide Arrays for Single-Nucleotide Polymorphism Discovery and Validation

  • First Published July 12, 2001
LETTER

Centromere Emergence in Evolution

  • First Published April 1, 2001
LETTER

Mycobacterium tuberculosis " > Comparing Genomes within the Species Mycobacterium tuberculosis

  • First Published April 1, 2001
METHODS

Detection of Deleted Genomic DNA Using a Semiautomated Computational Analysis of GeneChip Data

  • First Published November 21, 2000
RESEARCH

Mycobacterium DNA Arrays" > Simultaneous Genotyping and Species Identification Using Hybridization Pattern Recognition Analysis of Generic Mycobacterium DNA Arrays

  • First Published May 1, 1998
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