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Single-cell template strand sequencing reveals culture-induced chromosomal instability in a gibbon cell line

  • First Published May 4, 2026

A high-resolution map of small-scale inversions in the gibbon genome

  • First Published September 30, 2022

Precision environmental health monitoring by longitudinal exposome and multi-omics profiling

  • First Published June 6, 2022

Single-cell strand sequencing of a macaque genome reveals multiple nested inversions and breakpoint reuse during primate evolution

  • First Published October 22, 2020

Inversion variants in human and primate genomes

  • First Published May 18, 2018

Microfluidic isoform sequencing shows widespread splicing coordination in the human transcriptome

  • First Published December 1, 2017

Corrigendum: The evolution of African great ape subtelomeric heterochromatin and the fusion of human chromosome 2

  • First Published September 1, 2017

Interchromosomal core duplicons drive both evolutionary instability and disease susceptibility of the Chromosome 8p23.1 region

  • First Published October 7, 2016

Hominoid fission of chromosome 14/15 and the role of segmental duplications

  • First Published September 27, 2013

Evolution and diversity of copy number variation in the great ape lineage

  • First Published July 3, 2013

LRRC37 gene family" > Evolutionary dynamism of the primate LRRC37 gene family

  • First Published October 11, 2012

Understanding transcriptional regulation by integrative analysis of transcription factor binding data

  • First Published September 5, 2012

A highly integrated and complex PPARGC1A transcription factor binding network in HepG2 cells

  • First Published September 5, 2012

Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements

  • First Published September 5, 2012

Linking disease associations with regulatory information in the human genome

  • First Published September 5, 2012

Annotation of functional variation in personal genomes using RegulomeDB

  • First Published September 5, 2012

Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors

  • First Published September 5, 2012

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

  • First Published September 5, 2012

Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs

  • First Published September 5, 2012

The evolution of African great ape subtelomeric heterochromatin and the fusion of human chromosome 2

  • First Published March 14, 2012

Copy number variation of individual cattle genomes using next-generation sequencing

  • First Published February 2, 2012

Gorilla genome structural variation reveals evolutionary parallelisms with chimpanzee

  • First Published June 17, 2011

CNVnator: An approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing

  • First Published February 7, 2011

C. elegans" > Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans

  • First Published December 22, 2010

C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data" > Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data

  • First Published December 22, 2010

Alu repeat discovery and characterization within human genomes" > Alu repeat discovery and characterization within human genomes

  • First Published December 3, 2010

Genome-wide characterization of centromeric satellites from multiple mammalian genomes

  • First Published November 16, 2010

Candida albicans using RNA-seq" > Comprehensive annotation of the transcriptome of the human fungal pathogen Candida albicans using RNA-seq

  • First Published September 1, 2010

Analysis of copy number variations among diverse cattle breeds

  • First Published March 8, 2010

The genomic architecture of segmental duplications and associated copy number variants in dogs

  • First Published January 7, 2009

MSB: A mean-shift-based approach for the analysis of structural variation in the genome

  • First Published November 26, 2008

Sequencing human–gibbon breakpoints of synteny reveals mosaic new insertions at rearrangement sites

  • First Published November 24, 2008

Analysis of copy number variants and segmental duplications in the human genome: Evidence for a change in the process of formation in recent evolutionary history

  • First Published October 8, 2008

Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding

  • First Published September 11, 2008

A genomic analysis of RNA polymerase II modification and chromatin architecture related to 3′ end RNA polyadenylation

  • First Published May 16, 2008

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

  • First Published February 7, 2008

Integrated analysis of experimental data sets reveals many novel promoters in 1% of the human genome

  • First Published June 13, 2007

The DART classification of unannotated transcription within the ENCODE regions: Associating transcription with known and novel loci

  • First Published June 13, 2007

Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions

  • First Published June 13, 2007

Pseudogenes in the ENCODE regions: Consensus annotation, analysis of transcription, and evolution

  • First Published June 13, 2007

Structured RNAs in the ENCODE selected regions of the human genome

  • First Published June 13, 2007

Mapping of transcription factor binding regions in mammalian cells by ChIP: Comparison of array- and sequencing-based technologies

  • First Published June 13, 2007

Mapping the chromosomal targets of STAT1 by Sequence Tag Analysis of Genomic Enrichment (STAGE)

  • First Published June 13, 2007

What is a gene, post-ENCODE? History and updated definition

  • First Published June 13, 2007

Assessing the performance of different high-density tiling microarray strategies for mapping transcribed regions of the human genome

  • First Published November 21, 2006

Predicting essential genes in fungal genomes

  • First Published August 9, 2006

A preliminary comparative analysis of primate segmental duplications shows elevated substitution rates and a great-ape expansion of intrachromosomal duplications

  • First Published April 10, 2006

Design optimization methods for genomic DNA tiling arrays

  • First Published December 19, 2005

A genome-wide survey of structural variation between human and chimpanzee

  • First Published September 16, 2005

Punctuated duplication seeding events during the evolution of human chromosome 2p11

  • First Published June 17, 2005

Large-Scale Mutagenesis of the Yeast Genome Using a Tn7-Derived Multipurpose Transposon

  • First Published October 1, 2004

Recurrent Sites for New Centromere Seeding

  • First Published September 1, 2004

Analysis of Segmental Duplications and Genome Assembly in the Mouse

  • First Published May 3, 2004

Complex Events in the Evolution of the Human Pseudoautosomal Region 2 (PAR2)

  • First Published January 14, 2003

Neocentromeres in 15q24-26 Map to Duplicons Which Flanked an Ancestral Centromere in 15q25

  • First Published January 1, 2003

KIAA0187 Were Created through Independent Pericentromeric-Directed and Chromosome-Specific Duplication Mechanisms" > Human Paralogs of KIAA0187 Were Created through Independent Pericentromeric-Directed and Chromosome-Specific Duplication Mechanisms

  • First Published January 1, 2002

Centromere Emergence in Evolution

  • First Published April 1, 2001
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