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Research

Ultra-long-range interactions between active regulatory elements

Elias T. Friman
Ilya M. Flyamer
Davide Marenduzzo
Shelagh Boyle
Wendy A. Bickmore

First Published July 14, 2023

Research

Great ape Y Chromosome and mitochondrial DNA phylogenies reflect subspecies structure and patterns of mating and dispersal

Pille Hallast
Pierpaolo Maisano Delser
Chiara Batini
Daniel Zadik
Mariano Rocchi
Werner Schempp
Chris Tyler-Smith
Mark A. Jobling

First Published February 16, 2016

Resource

Chlorocebus aethiops sabaeus)" > The genome of the vervet (Chlorocebus aethiops sabaeus)

Wesley C. Warren
Anna J. Jasinska
Raquel García-Pérez
Hannes Svardal
Chad Tomlinson
Mariano Rocchi Nicoletta Archidiacono Oronzo Capozzi Patrick Minx Michael J. Montague Kim Kyung LaDeana W. Hillier Milinn Kremitzki Tina Graves Colby Chiang Jennifer Hughes Nam Tran Yu Huang Vasily Ramensky Oi-wa Choi Yoon J. Jung Christopher A. Schmitt Nikoleta Juretic Jessica Wasserscheid Trudy R. Turner Roger W. Wiseman Jennifer J. Tuscher Julie A. Karl Jörn E. Schmitz Roland Zahn David H. O'Connor Eugene Redmond Alex Nisbett Béatrice Jacquelin Michaela C. Müller-Trutwin Jason M. Brenchley Michel Dione Martin Antonio Gary P. Schroth Jay R. Kaplan Matthew J. Jorgensen Gregg W.C. Thomas Matthew W. Hahn Brian J. Raney Bronwen Aken Rishi Nag Juergen Schmitz Gennady Churakov Angela Noll Roscoe Stanyon David Webb Francoise Thibaud-Nissen Magnus Nordborg Tomas Marques-Bonet
... [+49 authors] ...,
Ken Dewar
George M. Weinstock
Richard K. Wilson
Nelson B. Freimer

First Published September 16, 2015

Research

The frequent evolutionary birth and death of functional promoters in mouse and human

Robert S. Young
Yoshihide Hayashizaki
Robin Andersson
Albin Sandelin
Hideya Kawaji
Masayoshi Itoh Timo Lassmann
... [+2 authors] ...,
Piero Carninci
Wendy A. Bickmore
Alistair R. Forrest
Martin S. Taylor

First Published July 30, 2015

Research

H4K16 acetylation marks active genes and enhancers of embryonic stem cells, but does not alter chromatin compaction

Gillian C.A. Taylor
Ragnhild Eskeland
Betül Hekimoglu-Balkan
Madapura M. Pradeepa
Wendy A. Bickmore

First Published August 29, 2013

Resource

A comprehensive molecular cytogenetic analysis of chromosome rearrangements in gibbons

Oronzo Capozzi
Lucia Carbone
Roscoe R. Stanyon
Annamaria Marra
Fengtang Yang
Christopher W. Whelan
Pieter J. de Jong
Mariano Rocchi
Nicoletta Archidiacono

First Published August 14, 2012

Research

Copy number variation analysis in the great apes reveals species-specific patterns of structural variation

Elodie Gazave
Fleur Darré
Carlos Morcillo-Suarez
Natalia Petit-Marty
Angel Carreño
Urko M. Marigorta Oliver A. Ryder Antoine Blancher Mariano Rocchi Elena Bosch
... [+5 authors] ...,
Carl Baker
Tomàs Marquès-Bonet
Evan E. Eichler
Arcadi Navarro

First Published August 8, 2011

Research

Gene amplification as double minutes or homogeneously staining regions in solid tumors: Origin and structure

Clelia Tiziana Storlazzi
Angelo Lonoce
Maria C. Guastadisegni
Domenico Trombetta
Pietro D'Addabbo
Giulia Daniele Alberto L'Abbate Gemma Macchia Cecilia Surace Klaas Kok Reinhard Ullmann Stefania Purgato
... [+7 authors] ...,
Orazio Palumbo
Massimo Carella
Peter F. Ambros
Mariano Rocchi

First Published July 14, 2010

Research

The effect of translocation-induced nuclear reorganization on gene expression

Louise Harewood
Frédéric Schütz
Shelagh Boyle
Paul Perry
Mauro Delorenzi
Wendy A. Bickmore
Alexandre Reymond

First Published March 8, 2010

Letter

Evolutionary descent of a human chromosome 6 neocentromere: A jump back to 17 million years ago

Oronzo Capozzi
Stefania Purgato
Pietro D'Addabbo
Nicoletta Archidiacono
Paola Battaglia
Anna Baroncini
... [+1 authors] ...,
Antonella Capucci
Roscoe Stanyon
Giuliano Della Valle
Mariano Rocchi

First Published May 1, 2009

Letter

Lack of bystander activation shows that localization exterior to chromosome territories is not sufficient to up-regulate gene expression

Céline Morey
Clémence Kress
Wendy A. Bickmore

First Published April 23, 2009

LETTER

Sequencing human–gibbon breakpoints of synteny reveals mosaic new insertions at rearrangement sites

Santhosh Girirajan
Lin Chen
Tina Graves
Tomas Marques-Bonet
Mario Ventura
Catrina Fronick Lucinda Fulton Mariano Rocchi
... [+3 authors] ...,
Robert S. Fulton
Richard K. Wilson
Elaine R. Mardis
Evan E. Eichler

First Published November 24, 2008

RESOURCE

Hylobates and Nomascus Gibbons by high-resolution synteny mapping" > Tracking the complex flow of chromosome rearrangements from the Hominoidea Ancestor to extant Hylobates and Nomascus Gibbons by high-resolution synteny mapping

Doriana Misceo
Oronzo Capozzi
Roberta Roberto
Maria P. Dell’Oglio
Mariano Rocchi
Roscoe Stanyon
Nicoletta Archidiacono

First Published June 13, 2008

RESOURCE

Molecular refinement of gibbon genome rearrangements

Roberta Roberto
Oronzo Capozzi
Richard K. Wilson
Elaine R. Mardis
Mariana Lomiento
Eray Tuzun Ze Cheng
... [+2 authors] ...,
Alan R. Mootnick
Nicoletta Archidiacono
Mariano Rocchi
Evan E. Eichler

First Published December 21, 2006

PERSPECTIVE

Ancestral genomes reconstruction: An integrated, multi-disciplinary approach is needed

Mariano Rocchi
Nicoletta Archidiacono
Roscoe Stanyon

First Published October 19, 2006

LETTER

A preliminary comparative analysis of primate segmental duplications shows elevated substitution rates and a great-ape expansion of intrachromosomal duplications

Xinwei She
Ge Liu
Mario Ventura
Shaying Zhao
Doriana Misceo
Roberta Roberto Maria Francesca Cardone
... [+2 authors] ...,
Mariano Rocchi
Eric D. Green
Nicoletta Archidiacano
Evan E. Eichler

First Published April 10, 2006

LETTER

A genome-wide survey of structural variation between human and chimpanzee

Tera L. Newman
Eray Tuzun
V. Anne Morrison
Karen E. Hayden
Mario Ventura
Sean D. McGrath
Mariano Rocchi
Evan E. Eichler

First Published September 16, 2005

LETTER

Punctuated duplication seeding events during the evolution of human chromosome 2p11

Julie E. Horvath
Cassandra L. Gulden
Rhea U. Vallente
Marla Y. Eichler
Mario Ventura
John D. McPherson Tina A. Graves
... [+2 authors] ...,
Richard K. Wilson
Stuart Schwartz
Mariano Rocchi
Evan E. Eichler

First Published June 17, 2005

LETTER

Recurrent Sites for New Centromere Seeding

Mario Ventura
Stefania Weigl
Lucia Carbone
Maria Francesca Cardone
Doriana Misceo
Mariagrazia Teti Pietro D'Addabbo Annelise Wandall Erik Björck Pieter J. de Jong
... [+5 authors] ...,
Xinwei She
Evan E. Eichler
Nicoletta Archidiacono
Mariano Rocchi

First Published September 1, 2004

LETTER

Insertion of Telomeric Repeats at Intrachromosomal Break Sites During Primate Evolution

Solomon G. Nergadze
Mariano Rocchi
Claus M. Azzalin
Chiara Mondello
Elena Giulotto

First Published August 12, 2004

ARTICLE

Analysis of Segmental Duplications and Genome Assembly in the Mouse

Jeffrey A. Bailey
Deanna M. Church
Mario Ventura
Mariano Rocchi
Evan E. Eichler

First Published May 3, 2004

LETTER

Complex Events in the Evolution of the Human Pseudoautosomal Region 2 (PAR2)

Fadi J. Charchar
Marta Svartman
Nisrine El-Mogharbel
Mario Ventura
Patrick Kirby
Maria R. Matarazzo
... [+1 authors] ...,
Alfredo Ciccodicola
Mariano Rocchi
Maurizio D'Esposito
Jennifer A. Marshall Graves

First Published January 14, 2003

LETTER

Neocentromeres in 15q24-26 Map to Duplicons Which Flanked an Ancestral Centromere in 15q25

Mario Ventura
Jonathan M. Mudge
Valeria Palumbo
Sally Burn
Elisabeth Blennow
Mauro Pierluigi Roberto Giorda
... [+2 authors] ...,
Orsetta Zuffardi
Nicoletta Archidiacono
Michael S. Jackson
Mariano Rocchi

First Published January 1, 2003

LETTER

KIAA0187 Were Created through Independent Pericentromeric-Directed and Chromosome-Specific Duplication Mechanisms" > Human Paralogs of KIAA0187 Were Created through Independent Pericentromeric-Directed and Chromosome-Specific Duplication Mechanisms

Moira Crosier
Luigi Viggiano
Jane Guy
Doriana Misceo
Robert Stones
Wenbin Wei Tom Hearn
... [+2 authors] ...,
Mario Ventura
Nicoletta Archidiacono
Mariano Rocchi
Michael S. Jackson

First Published January 1, 2002

LETTER

Centromere Emergence in Evolution

Mario Ventura
Nicoletta Archidiacono
Mariano Rocchi

First Published April 1, 2001

LETTER

Centromere Repositioning

Giuseppe Montefalcone
Sergio Tempesta
Mariano Rocchi
Nicoletta Archidiacono

First Published December 1, 1999

ARTICLE

CAGGG Repeats and the Pericentromeric Duplication of the Hominoid Genome

Evan E. Eichler
Nicoletta Archidiacono
Mariano Rocchi

First Published November 1, 1999

ARTICLE

Extreme Reduction of Chromosome-Specific α-Satellite Array Is Unusually Common in Human Chromosome 21

Anthony W.I. Lo
Gregory C.-C. Liao
Mariano Rocchi
K.H. Andy Choo

First Published October 1, 1999