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Method

Combining DNA and protein alignments to improve genome annotation with LiftOn

  • First Published December 27, 2024
Research

Rearrangements of viral and human genomes at human papillomavirus integration events and their allele-specific impacts on cancer genome regulation

  • First Published December 5, 2024
Method

Effects of transcriptional noise on estimates of gene and transcript expression in RNA sequencing experiments

  • First Published December 23, 2020
Research

High-resolution structural genomics reveals new therapeutic vulnerabilities in glioblastoma

  • First Published June 27, 2019
Research

Human contamination in bacterial genomes has created thousands of spurious proteins

  • First Published May 7, 2019
Resource

Genome-wide annotation of microRNA primary transcript structures reveals novel regulatory mechanisms

  • First Published August 19, 2015
Method

TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data

  • First Published July 24, 2014
Method

Functional DNA methylation differences between tissues, cell types, and across individuals discovered using the M&M algorithm

  • First Published June 26, 2013
Method

Estimating absolute methylation levels at single-CpG resolution from methylation enrichment and restriction enzyme sequencing methods

  • First Published June 26, 2013
Method

Integrative analysis of genome-wide loss of heterozygosity and monoallelic expression at nucleotide resolution reveals disrupted pathways in triple-negative breast cancer

  • First Published May 25, 2012
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