Perspective
The Topological Regulatory Logic of noncoding RNA–mediated gene expression
- First Published June 17, 2026
Resource
A limited set of transcriptional programs define major cell types
- First Published July 29, 2020
Resource
Dynamics of microRNA expression during mouse prenatal development
- First Published October 23, 2019
Method
An extended set of yeast-based functional assays accurately identifies human disease mutations
- First Published March 14, 2016
Research
De novo DNA demethylation and noncoding transcription define active intergenic regulatory elements
- First Published June 28, 2013
Research
Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs
- First Published September 5, 2012
Research
Understanding transcriptional regulation by integrative analysis of transcription factor binding data
- First Published September 5, 2012
Resource
The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
- First Published September 5, 2012
Method
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
- First Published August 30, 2012
Resource
Drosophila cell lines" > The transcriptional diversity of 25 Drosophila cell lines
- First Published December 22, 2010
Resource
C. elegans ORFeome" > Large-scale RACE approach for proactive experimental definition of C. elegans ORFeome
- First Published October 2, 2009
Resource
Analysis of the human E2 ubiquitin conjugating enzyme protein interaction network
- First Published June 23, 2009
Methods
Shifted Transversal Design smart-pooling for high coverage interactome mapping
- First Published May 15, 2009
LETTER
Saccharomyces cerevisiae predicted ORFeome" > Revisiting the Saccharomyces cerevisiae predicted ORFeome
- First Published May 23, 2008
LETTER
Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
- First Published February 7, 2008
LETTER
Whole-genome maps of USF1 and USF2 binding and histone H3 acetylation reveal new aspects of promoter structure and candidate genes for common human disorders
- First Published January 29, 2008
ARTICLE
The DART classification of unannotated transcription within the ENCODE regions: Associating transcription with known and novel loci
- First Published June 13, 2007
ARTICLE
Prominent use of distal 5′ transcription start sites and discovery of a large number of additional exons in ENCODE regions
- First Published June 13, 2007
LETTER
Structured RNAs in the ENCODE selected regions of the human genome
- First Published June 13, 2007
Methods
Examples of the complex architecture of the human transcriptome revealed by RACE and high-density tiling arrays
- First Published July 5, 2005
RESOURCE
C. elegans ORFeome by cloning TWINSCAN predictions" > Closing in on the C. elegans ORFeome by cloning TWINSCAN predictions
- First Published April 1, 2005
RESOURCE
Caenorhabditis elegans Promoterome" > A First Version of the Caenorhabditis elegans Promoterome
- First Published October 15, 2004
RESOURCE
Brucella melitensis ORFeome Version 1.1" > Generation of the Brucella melitensis ORFeome Version 1.1
- First Published October 15, 2004
PERSPECTIVE
ORFeome Cloning and Systems Biology: Standardized Mass Production of the Parts From the Parts-List
- First Published October 15, 2004
Insight/Outlook
Academia-Industry Collaboration: An Integral Element for Building “Omic” Resources
- First Published October 15, 2004
Methods
C. elegans Proteins" > High-Throughput Expression of C. elegans Proteins
- First Published October 15, 2004
RESOURCE
Human ORFeome Version 1.1: A Platform for Reverse Proteomics
- First Published October 15, 2004
Methods
Annotation Transfer Between Genomes: Protein–Protein Interologs and Protein–DNA Regulogs
- First Published June 1, 2004
ARTICLE
Novel RNAs Identified From an In-Depth Analysis of the Transcriptome of Human Chromosomes 21 and 22
- First Published March 1, 2004
METHODS
Identification of Potential Interaction Networks Using Sequence-Based Searches for Conserved Protein-Protein Interactions or “Interologs”
- First Published December 1, 2001
METHODS
Flexible Use of High-Density Oligonucleotide Arrays for Single-Nucleotide Polymorphism Discovery and Validation
- First Published July 12, 2001
LETTER
Mycobacterium tuberculosis " > Comparing Genomes within the Species Mycobacterium tuberculosis
- First Published April 1, 2001
METHODS
Detection of Deleted Genomic DNA Using a Semiautomated Computational Analysis of GeneChip Data
- First Published November 21, 2000
METHODS
A Genetic Strategy to Eliminate Self-Activator Baits Prior to High-Throughput Yeast Two-Hybrid Screens
- First Published November 1, 1999