Research
Closing the gaps, and improving somatic structural variant analysis and benchmarking using CHM13-T2T
- First Published March 17, 2025
Research
Rearrangements of viral and human genomes at human papillomavirus integration events and their allele-specific impacts on cancer genome regulation
- First Published December 5, 2024
Method
Crunch: integrated processing and modeling of ChIP-seq data in terms of regulatory motifs
- First Published May 28, 2019
Method
An extended set of yeast-based functional assays accurately identifies human disease mutations
- First Published March 14, 2016
Method
ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs
- First Published February 10, 2014
Research
Modeling of epigenome dynamics identifies transcription factors that mediate Polycomb targeting
- First Published September 10, 2012
Method
Spark: A navigational paradigm for genomic data exploration
- First Published September 7, 2012
Research
Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liver
- First Published June 15, 2010
Research
The genome sequence of the spontaneously hypertensive rat: Analysis and functional significance
- First Published April 29, 2010