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Hash functions in nucleotide sequence analysis

Ke Chen
Xiang Li
Qian Shi
Mingfu Shao
Paul Medvedev

First Published May 4, 2026

Efficient mapping of accurate long reads in minimizer space with mapquik

Bariş Ekim
Kristoffer Sahlin
Paul Medvedev
Bonnie Berger
Rayan Chikhi

First Published June 30, 2023

Assembler artifacts include misassembly because of unsafe unitigs and underassembly because of bidirected graphs

Amatur Rahman
Paul Medvedev

First Published July 27, 2022

k-mers for querying large collections of sequencing data sets" > Data structures based on k-mers for querying large collections of sequencing data sets

Camille Marchet
Christina Boucher
Simon J. Puglisi
Paul Medvedev
Mikaël Salson
Rayan Chikhi

First Published December 16, 2020

Yeast genetic interaction screen of human genes associated with amyotrophic lateral sclerosis: identification of MAP2K5 kinase as a potential drug target

Myungjin Jo
Ah Young Chung
Nozomu Yachie
Minchul Seo
Hyejin Jeon
Youngpyo Nam Yeojin Seo Eunmi Kim Quan Zhong
... [+4 authors] ...,
Marc Vidal
Hae Chul Park
Frederick P. Roth
Kyoungho Suk

First Published June 8, 2017

An extended set of yeast-based functional assays accurately identifies human disease mutations

Song Sun
Fan Yang
Guihong Tan
Michael Costanzo
Rose Oughtred
Jodi Hirschman Chandra L. Theesfeld Pritpal Bansal Nidhi Sahni Song Yi Analyn Yu Tanya Tyagi Cathy Tie David E. Hill Marc Vidal
... [+10 authors] ...,
Brenda J. Andrews
Charles Boone
Kara Dolinski
Frederick P. Roth

First Published March 14, 2016

A time- and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla Y

Marta Tomaszkiewicz
Samarth Rangavittal
Monika Cechova
Rebeca Campos Sanchez
Howard W. Fescemyer
Robert Harris Danling Ye Patricia C.M. O'Brien Rayan Chikhi
... [+4 authors] ...,
Oliver A. Ryder
Malcolm A. Ferguson-Smith
Paul Medvedev
Kateryna D. Makova

First Published March 2, 2016

Accurate typing of short tandem repeats from genome-wide sequencing data and its applications

Arkarachai Fungtammasan
Guruprasad Ananda
Suzanne E. Hile
Marcia Shu-Wei Su
Chen Sun
Robert Harris
Paul Medvedev
Kristin Eckert
Kateryna D. Makova

First Published March 30, 2015

Detecting copy number variation with mated short reads

Paul Medvedev
Marc Fiume
Misko Dzamba
Tim Smith
Michael Brudno

First Published August 30, 2010

C. elegans ORFeome" > Large-scale RACE approach for proactive experimental definition of C. elegans ORFeome

Kourosh Salehi-Ashtiani
Chenwei Lin
Tong Hao
Yun Shen
David Szeto
Xinping Yang Lila Ghamsari HanJoo Lee Changyu Fan Ryan R. Murray Stuart Milstein Nenad Svrzikapa
... [+7 authors] ...,
Michael E. Cusick
Frederick P. Roth
David E. Hill
Marc Vidal

First Published October 2, 2009

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