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Method

Accurate reconstruction of bacterial pan- and core genomes with PEPPAN

  • Zhemin Zhou
  • Jane Charlesworth
  • Mark Achtman
  • First Published October 14, 2020
Resource

Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity" > The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity

  • Zhemin Zhou
  • Nabil-Fareed Alikhan
  • Khaled Mohamed
  • Yulei Fan
  • Mark Achtman
  • Derek Brown Marie Chattaway Tim Dallman Richard Delahay Christian Kornschober Ariane Pietzka Burkhard Malorny Liljana Petrovska Rob Davies Andy Robertson
  • ... [+10 authors] ...,
  • William Tyne
  • François-Xavier Weill
  • Marie Accou-Demartin
  • Nicola Williams
  • First Published December 6, 2019
Method

GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens

  • Zhemin Zhou
  • Nabil-Fareed Alikhan
  • Martin J. Sergeant
  • Nina Luhmann
  • Cátia Vaz
  • Alexandre P. Francisco
  • João André Carriço
  • Mark Achtman
  • First Published July 26, 2018
Research

Yeast genetic interaction screen of human genes associated with amyotrophic lateral sclerosis: identification of MAP2K5 kinase as a potential drug target

  • Myungjin Jo
  • Ah Young Chung
  • Nozomu Yachie
  • Minchul Seo
  • Hyejin Jeon
  • Youngpyo Nam Yeojin Seo Eunmi Kim Quan Zhong
  • ... [+4 authors] ...,
  • Marc Vidal
  • Hae Chul Park
  • Frederick P. Roth
  • Kyoungho Suk
  • First Published June 8, 2017
Method

An extended set of yeast-based functional assays accurately identifies human disease mutations

  • Song Sun
  • Fan Yang
  • Guihong Tan
  • Michael Costanzo
  • Rose Oughtred
  • Jodi Hirschman Chandra L. Theesfeld Pritpal Bansal Nidhi Sahni Song Yi Analyn Yu Tanya Tyagi Cathy Tie David E. Hill Marc Vidal
  • ... [+10 authors] ...,
  • Brenda J. Andrews
  • Charles Boone
  • Kara Dolinski
  • Frederick P. Roth
  • First Published March 14, 2016
Research

Staphylococcus aureus pandemic" > A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic

  • Matthew T.G. Holden
  • Li-Yang Hsu
  • Kevin Kurt
  • Lucy A. Weinert
  • Alison E. Mather
  • Simon R. Harris Birgit Strommenger Franziska Layer Wolfgang Witte Herminia de Lencastre Robert Skov Henrik Westh Helena Žemličková Geoffrey Coombs Angela M. Kearns Robert L.R. Hill Jonathan Edgeworth Ian Gould Vanya Gant Jonathan Cooke Giles F. Edwards Paul R. McAdam Kate E. Templeton Angela McCann Zhemin Zhou Santiago Castillo-Ramírez Edward J. Feil Lyndsey O. Hudson Mark C. Enright Francois Balloux David M. Aanensen Brian G. Spratt J. Ross Fitzgerald
  • ... [+28 authors] ...,
  • Julian Parkhill
  • Mark Achtman
  • Stephen D. Bentley
  • Ulrich Nübel
  • First Published January 8, 2013
Letter

Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype" > Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype

  • Robert A. Kingsley
  • Chisomo L. Msefula
  • Nicholas R. Thomson
  • Samuel Kariuki
  • Kathryn E. Holt
  • Melita A. Gordon David Harris Louise Clarke Sally Whitehead Vartul Sangal Kevin Marsh Mark Achtman Malcolm E. Molyneux Martin Cormican
  • ... [+9 authors] ...,
  • Julian Parkhill
  • Calman A. MacLennan
  • Robert S. Heyderman
  • Gordon Dougan
  • First Published November 9, 2009
Resource

C. elegans ORFeome" > Large-scale RACE approach for proactive experimental definition of C. elegans ORFeome

  • Kourosh Salehi-Ashtiani
  • Chenwei Lin
  • Tong Hao
  • Yun Shen
  • David Szeto
  • Xinping Yang Lila Ghamsari HanJoo Lee Changyu Fan Ryan R. Murray Stuart Milstein Nenad Svrzikapa
  • ... [+7 authors] ...,
  • Michael E. Cusick
  • Frederick P. Roth
  • David E. Hill
  • Marc Vidal
  • First Published October 2, 2009
Resource

Analysis of the human E2 ubiquitin conjugating enzyme protein interaction network

  • Gabriel Markson
  • Christina Kiel
  • Russell Hyde
  • Stephanie Brown
  • Panagoula Charalabous
  • Anja Bremm Jennifer Semple Jonathan Woodsmith Simon Duley Kourosh Salehi-Ashtiani Marc Vidal
  • ... [+6 authors] ...,
  • David Komander
  • Luis Serrano
  • Paul Lehner
  • Christopher M. Sanderson
  • First Published June 23, 2009
Methods

Shifted Transversal Design smart-pooling for high coverage interactome mapping

  • Xiaofeng Xin
  • Jean-François Rual
  • Tomoko Hirozane-Kishikawa
  • David E. Hill
  • Marc Vidal
  • Charles Boone
  • Nicolas Thierry-Mieg
  • First Published May 15, 2009
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