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Method

Multisample motif discovery and visualization for tandem repeats

  • Yaran Zhang
  • Marc Hulsman
  • Alex Salazar
  • Niccolò Tesi
  • Lydian Knoop
  • Sven van der Lee
  • ... [+1 authors] ...,
  • Sanduni Wijesekera
  • Jana Krizova
  • Erik-Jan Kamsteeg
  • Henne Holstege
  • First Published November 13, 2024
Method

otter" > Characterizing tandem repeat complexities across long-read sequencing platforms with TREAT and otter

  • Niccoló Tesi
  • Alex Salazar
  • Yaran Zhang
  • Sven van der Lee
  • Marc Hulsman
  • Lydian Knoop Sanduni Wijesekera Jana Krizova Anne-Fleur Schneider Maartje Pennings
  • ... [+5 authors] ...,
  • Kristel Sleegers
  • Erik-Jan Kamsteeg
  • Marcel Reinders
  • Henne Holstege
  • First Published October 15, 2024
Research

Callithrix jacchus genome" > Discovery of a new repeat family in the Callithrix jacchus genome

  • Miriam K. Konkel
  • Brygg Ullmer
  • Erika L. Arceneaux
  • Sreeja Sanampudi
  • Sarah A. Brantley
  • Robert Hubley
  • Arian F.A. Smit
  • Mark A. Batzer
  • First Published February 25, 2016
Research

Somatic mutations found in the healthy blood compartment of a 115-yr-old woman demonstrate oligoclonal hematopoiesis

  • Henne Holstege
  • Wayne Pfeiffer
  • Daoud Sie
  • Marc Hulsman
  • Thomas J. Nicholas
  • Clarence C. Lee Tristen Ross Jue Lin Mark A. Miller Bauke Ylstra Hanne Meijers-Heijboer Martijn H. Brugman Frank J.T. Staal Gert Holstege
  • ... [+9 authors] ...,
  • Marcel J.T. Reinders
  • Timothy T. Harkins
  • Samuel Levy
  • Erik A. Sistermans
  • First Published April 23, 2014
Method

Alu insertions in diverse human populations" > Mobile element scanning (ME-Scan) identifies thousands of novel Alu insertions in diverse human populations

  • David J. Witherspoon
  • Yuhua Zhang
  • Jinchuan Xing
  • W. Scott Watkins
  • Hongseok Ha
  • Mark A. Batzer
  • Lynn B. Jorde
  • First Published April 18, 2013
Perspective

Reading TE leaves: New approaches to the identification of transposable element insertions

  • David A. Ray
  • Mark A. Batzer
  • First Published June 1, 2011
Letter

5′-Transducing SVA retrotransposon groups spread efficiently throughout the human genome

  • Annette Damert
  • Julija Raiz
  • Axel V. Horn
  • Johannes Löwer
  • Hui Wang
  • Jinchuan Xing
  • Mark A. Batzer
  • Roswitha Löwer
  • Gerald G. Schumann
  • First Published August 3, 2009
Letter

Mobile elements create structural variation: Analysis of a complete human genome

  • Jinchuan Xing
  • Yuhua Zhang
  • Kyudong Han
  • Abdel Halim Salem
  • Shurjo K. Sen
  • Chad D. Huff Qiong Zhou
  • ... [+2 authors] ...,
  • Ewen F. Kirkness
  • Samuel Levy
  • Mark A. Batzer
  • Lynn B. Jorde
  • First Published May 13, 2009
LETTER

Monodelphis domestica" > Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica

  • Andrew J. Gentles
  • Matthew J. Wakefield
  • Oleksiy Kohany
  • Wanjun Gu
  • Mark A. Batzer
  • David D. Pollock
  • Jerzy Jurka
  • First Published May 10, 2007
LETTER

Alu amplification" > Under the genomic radar: The Stealth model of Alu amplification

  • Kyudong Han
  • Jinchuan Xing
  • Hui Wang
  • Dale J. Hedges
  • Randall K. Garber
  • Richard Cordaux
  • Mark A. Batzer
  • First Published May 2, 2005
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