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Closing the gaps, and improving somatic structural variant analysis and benchmarking using CHM13-T2T

Luis F. Paulin
Jeremy Fan
Kieran O'Neill
Erin Pleasance
Vanessa L. Porter
Steven J.M. Jones
Fritz J. Sedlazeck

First Published March 17, 2025

Evolutionarily new genes in humans with disease phenotypes reveal functional enrichment patterns shaped by adaptive innovation and sexual selection

Jian-Hai Chen
Patrick Landback
Deanna Arsala
Alexander Guzzetta
Shengqian Xia
Jared Atlas Dylan Sosa
... [+2 authors] ...,
Yong E. Zhang
Jingqiu Cheng
Bairong Shen
Manyuan Long

First Published February 14, 2025

Rearrangements of viral and human genomes at human papillomavirus integration events and their allele-specific impacts on cancer genome regulation

Vanessa L. Porter
Michelle Ng
Kieran O'Neill
Signe MacLennan
Richard D. Corbett
Luka Culibrk Zeid Hamadeh Marissa Iden Rachel Schmidt Shirng-Wern Tsaih Carolyn Nakisige Martin Origa Jackson Orem Glenn Chang Jeremy Fan Ka Ming Nip Vahid Akbari Simon K. Chan James Hopkins Richard A. Moore Eric Chuah Karen L. Mungall Andrew J. Mungall
... [+18 authors] ...,
Inanc Birol
Steven J.M. Jones
Janet S. Rader
Marco A. Marra

First Published December 5, 2024

Drosophila melanogaster" > Corrigendum: A long-term demasculinization of X-linked intergenic noncoding RNAs in Drosophila melanogaster

Ge Gao
Maria D. Vibranovski
Li Zhang
Zheng Li
Min Liu
Yong E. Zhang Xinmin Li Wenxia Zhang
... [+3 authors] ...,
Qichang Fan
Nicholas W. VanKuren
Manyuan Long
Liping Wei

First Published September 3, 2019

GenTree, an integrated resource for analyzing the evolution and function of primate-specific coding genes

Yi Shao
Chunyan Chen
Hao Shen
Bin Z. He
Daqi Yu
Shuai Jiang Shilei Zhao Zhiqiang Gao Zhenglin Zhu Xi Chen Yan Fu
... [+6 authors] ...,
Hua Chen
Ge Gao
Manyuan Long
Yong E. Zhang

First Published March 12, 2019

LTR-mediated retroposition as a mechanism of RNA-based duplication in metazoans

Shengjun Tan
Margarida Cardoso-Moreira
Wenwen Shi
Dan Zhang
Jiawei Huang
Yanan Mao Hangxing Jia Yaqiong Zhang Chunyan Chen Yi Shao Liang Leng
... [+6 authors] ...,
Zhonghua Liu
Xun Huang
Manyuan Long
Yong E. Zhang

First Published October 20, 2016

Drosophila melanogaster" > A long-term demasculinization of X-linked intergenic noncoding RNAs in Drosophila melanogaster

Ge Gao
Maria D. Vibranovski
Li Zhang
Zheng Li
Ming Liu
Yong E. Zhang Xinmin Li Wenxia Zhang
... [+3 authors] ...,
Qichang Fan
Nicholas W. VanKuren
Manyuan Long
Liping Wei

First Published January 9, 2014

Spark: A navigational paradigm for genomic data exploration

Cydney B. Nielsen
Hamid Younesy
Henriette O'Geen
Xiaoqin Xu
Andrew R. Jackson
Aleksandar Milosavljevic Ting Wang
... [+2 authors] ...,
Joseph F. Costello
Martin Hirst
Peggy J. Farnham
Steven J.M. Jones

First Published September 7, 2012

Drosophila" > Age-dependent chromosomal distribution of male-biased genes in Drosophila

Yong E. Zhang
Maria D. Vibranovski
Benjamin H. Krinsky
Manyuan Long

First Published August 26, 2010

Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liver

Brad G. Hoffman
Gordon Robertson
Bogard Zavaglia
Mike Beach
Rebecca Cullum
Sam Lee Galina Soukhatcheva Leping Li Elizabeth D. Wederell Nina Thiessen Mikhail Bilenky Timothee Cezard Angela Tam Baljit Kamoh Inanc Birol Derek Dai YongJun Zhao Martin Hirst C. Bruce Verchere
... [+14 authors] ...,
Cheryl D. Helgason
Marco A. Marra
Steven J.M. Jones
Pamela A. Hoodless

First Published June 15, 2010

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