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Research

Epigenetic characterization of pseudogenes across human tissues

  • Yunzhe Jiang
  • Beatrice Borsari
  • Mark Gerstein
  • First Published April 15, 2026
Research

Evolutionarily new genes in humans with disease phenotypes reveal functional enrichment patterns shaped by adaptive innovation and sexual selection

  • Jian-Hai Chen
  • Patrick Landback
  • Deanna Arsala
  • Alexander Guzzetta
  • Shengqian Xia
  • Jared Atlas Dylan Sosa
  • ... [+2 authors] ...,
  • Yong E. Zhang
  • Jingqiu Cheng
  • Bairong Shen
  • Manyuan Long
  • First Published February 14, 2025
Resource

Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships" > Binding profiles for 961 Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships

  • Michelle Kudron
  • Louis Gevirtzman
  • Alec Victorsen
  • Bridget C. Lear
  • Jiahao Gao
  • Jinrui Xu Swapna Samanta Emily Frink Adri Tran-Pearson Chau Huynh Dionne Vafeados Ann Hammonds William Fisher Martha Wall Greg Wesseling Vanessa Hernandez Zhichun Lin Mary Kasparian Kevin White Ravi Allada Mark Gerstein
  • ... [+16 authors] ...,
  • LaDeana Hillier
  • Susan E. Celniker
  • Valerie Reinke
  • Robert H. Waterston
  • First Published October 22, 2024
Corrigendum

Drosophila melanogaster" > Corrigendum: A long-term demasculinization of X-linked intergenic noncoding RNAs in Drosophila melanogaster

  • Ge Gao
  • Maria D. Vibranovski
  • Li Zhang
  • Zheng Li
  • Min Liu
  • Yong E. Zhang Xinmin Li Wenxia Zhang
  • ... [+3 authors] ...,
  • Qichang Fan
  • Nicholas W. VanKuren
  • Manyuan Long
  • Liping Wei
  • First Published September 3, 2019
Resource

GenTree, an integrated resource for analyzing the evolution and function of primate-specific coding genes

  • Yi Shao
  • Chunyan Chen
  • Hao Shen
  • Bin Z. He
  • Daqi Yu
  • Shuai Jiang Shilei Zhao Zhiqiang Gao Zhenglin Zhu Xi Chen Yan Fu
  • ... [+6 authors] ...,
  • Hua Chen
  • Ge Gao
  • Manyuan Long
  • Yong E. Zhang
  • First Published March 12, 2019
Research

Mus caroli and Mus pahari genomes" > Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes

  • David Thybert
  • Maša Roller
  • Fábio C.P. Navarro
  • Ian Fiddes
  • Ian Streeter
  • Christine Feig David Martin-Galvez Mikhail Kolmogorov Václav Janoušek Wasiu Akanni Bronwen Aken Sarah Aldridge Varshith Chakrapani William Chow Laura Clarke Carla Cummins Anthony Doran Matthew Dunn Leo Goodstadt Kerstin Howe Matthew Howell Ambre-Aurore Josselin Robert C. Karn Christina M. Laukaitis Lilue Jingtao Fergal Martin Matthieu Muffato Stefanie Nachtweide Michael A. Quail Cristina Sisu Mario Stanke Klara Stefflova Cock Van Oosterhout Frederic Veyrunes Ben Ward Fengtang Yang Golbahar Yazdanifar Amonida Zadissa David J. Adams Alvis Brazma Mark Gerstein Benedict Paten
  • ... [+37 authors] ...,
  • Son Pham
  • Thomas M. Keane
  • Duncan T. Odom
  • Paul Flicek
  • First Published March 21, 2018
Research

LTR-mediated retroposition as a mechanism of RNA-based duplication in metazoans

  • Shengjun Tan
  • Margarida Cardoso-Moreira
  • Wenwen Shi
  • Dan Zhang
  • Jiawei Huang
  • Yanan Mao Hangxing Jia Yaqiong Zhang Chunyan Chen Yi Shao Liang Leng
  • ... [+6 authors] ...,
  • Zhonghua Liu
  • Xun Huang
  • Manyuan Long
  • Yong E. Zhang
  • First Published October 20, 2016
Research

Drosophila melanogaster" > A long-term demasculinization of X-linked intergenic noncoding RNAs in Drosophila melanogaster

  • Ge Gao
  • Maria D. Vibranovski
  • Li Zhang
  • Zheng Li
  • Ming Liu
  • Yong E. Zhang Xinmin Li Wenxia Zhang
  • ... [+3 authors] ...,
  • Qichang Fan
  • Nicholas W. VanKuren
  • Manyuan Long
  • Liping Wei
  • First Published January 9, 2014
Research

Analysis of variable retroduplications in human populations suggests coupling of retrotransposition to cell division

  • Alexej Abyzov
  • Rebecca Iskow
  • Omer Gokcumen
  • David W. Radke
  • Suganthi Balasubramanian
  • Baikang Pei
  • Lukas Habegger
  • Charles Lee
  • Mark Gerstein
  • First Published September 11, 2013
Research

The origin, evolution, and functional impact of short insertion–deletion variants identified in 179 human genomes

  • Stephen B. Montgomery
  • David L. Goode
  • Erika Kvikstad
  • Cornelis A. Albers
  • Zhengdong D. Zhang
  • Xinmeng Jasmine Mu Guruprasad Ananda Bryan Howie Konrad J. Karczewski Kevin S. Smith Vanessa Anaya Rhea Richardson Joe Davis Daniel G. MacArthur Arend Sidow Laurent Duret Mark Gerstein
  • ... [+12 authors] ...,
  • Kateryna D. Makova
  • Jonathan Marchini
  • Gil McVean
  • Gerton Lunter
  • First Published March 11, 2013
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