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Research

Epigenetic characterization of pseudogenes across human tissues

  • Yunzhe Jiang
  • Beatrice Borsari
  • Mark Gerstein
  • First Published April 15, 2026
Research

Identification of the male-specific region on the guppy Y Chromosome from a haplotype-resolved assembly

  • Kang Du
  • Oliver Deusch
  • Ilja Bezrukov
  • Christa Lanz
  • Yann Guiguen
  • Margarete Hoffmann
  • ... [+1 authors] ...,
  • Anette Habring
  • Detlef Weigel
  • Manfred Schartl
  • Christine Dreyer
  • First Published March 5, 2025
Resource

Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships" > Binding profiles for 961 Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships

  • Michelle Kudron
  • Louis Gevirtzman
  • Alec Victorsen
  • Bridget C. Lear
  • Jiahao Gao
  • Jinrui Xu Swapna Samanta Emily Frink Adri Tran-Pearson Chau Huynh Dionne Vafeados Ann Hammonds William Fisher Martha Wall Greg Wesseling Vanessa Hernandez Zhichun Lin Mary Kasparian Kevin White Ravi Allada Mark Gerstein
  • ... [+16 authors] ...,
  • LaDeana Hillier
  • Susan E. Celniker
  • Valerie Reinke
  • Robert H. Waterston
  • First Published October 22, 2024
Research

Xiphophorus species provide new insights into microevolution, hybrid incompatibility, and epistasis" > High resolution genomes of multiple Xiphophorus species provide new insights into microevolution, hybrid incompatibility, and epistasis

  • Yuan Lu
  • Edward Rice
  • Kang Du
  • Susanne Kneitz
  • Magali Naville
  • Corentin Dechaud Jean-Nicolas Volff Mikki Boswell William Boswell LaDeana Hillier Chad Tomlinson
  • ... [+6 authors] ...,
  • Kremitzki Milin
  • Ronald B. Walter
  • Manfred Schartl
  • Wesley C. Warren
  • First Published May 5, 2023
Research

ceRNA crosstalk mediated by ncRNAs is a novel regulatory mechanism in fish sex determination and differentiation

  • Lili Tang
  • Fei Huang
  • Wuxin You
  • Ansgar Poetsch
  • Rafael Henrique Nóbrega
  • Deborah Mary Power Tengfei Zhu Kaiqiang Liu Hong-Yan Wang Qian Wang
  • ... [+5 authors] ...,
  • Xiwen Xu
  • Bo Feng
  • Manfred Schartl
  • Changwei Shao
  • First Published August 12, 2022
Resource

Girardinichthys multiradiatus, and the evolution of sex chromosomes and placentation" > Genome biology of the darkedged splitfin, Girardinichthys multiradiatus, and the evolution of sex chromosomes and placentation

  • Kang Du
  • Martin Pippel
  • Susanne Kneitz
  • Romain Feron
  • Irene da Cruz
  • Sylke Winkler Brigitta Wilde Edgar G. Avila Luna
  • ... [+3 authors] ...,
  • Gene Myers
  • Yann Guiguen
  • Constantino Macias Garcia
  • Manfred Schartl
  • First Published January 26, 2022
Research

gsdf as the master sex determining gene of sablefish" > Allelic diversification after transposable element exaptation promoted gsdf as the master sex determining gene of sablefish

  • Amaury Herpin
  • Manfred Schartl
  • Alexandra Depincé
  • Yann Guiguen
  • Julien Bobe
  • Aurélie Hua-Van Edward S. Hayman Anna Octavera
  • ... [+3 authors] ...,
  • Goro Yoshizaki
  • Krista M. Nichols
  • Giles W. Goetz
  • J. Adam Luckenbach
  • First Published June 28, 2021
Research

Fixation of allelic gene expression landscapes and expression bias pattern shape the transcriptome of the clonal Amazon molly

  • Yuan Lu
  • David Bierbach
  • Jenny Ormanns
  • Wesley C. Warren
  • Ronald B. Walter
  • Manfred Schartl
  • First Published February 5, 2021
Research

Mus caroli and Mus pahari genomes" > Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes

  • David Thybert
  • Maša Roller
  • Fábio C.P. Navarro
  • Ian Fiddes
  • Ian Streeter
  • Christine Feig David Martin-Galvez Mikhail Kolmogorov Václav Janoušek Wasiu Akanni Bronwen Aken Sarah Aldridge Varshith Chakrapani William Chow Laura Clarke Carla Cummins Anthony Doran Matthew Dunn Leo Goodstadt Kerstin Howe Matthew Howell Ambre-Aurore Josselin Robert C. Karn Christina M. Laukaitis Lilue Jingtao Fergal Martin Matthieu Muffato Stefanie Nachtweide Michael A. Quail Cristina Sisu Mario Stanke Klara Stefflova Cock Van Oosterhout Frederic Veyrunes Ben Ward Fengtang Yang Golbahar Yazdanifar Amonida Zadissa David J. Adams Alvis Brazma Mark Gerstein Benedict Paten
  • ... [+37 authors] ...,
  • Son Pham
  • Thomas M. Keane
  • Duncan T. Odom
  • Paul Flicek
  • First Published March 21, 2018
Research

Analysis of variable retroduplications in human populations suggests coupling of retrotransposition to cell division

  • Alexej Abyzov
  • Rebecca Iskow
  • Omer Gokcumen
  • David W. Radke
  • Suganthi Balasubramanian
  • Baikang Pei
  • Lukas Habegger
  • Charles Lee
  • Mark Gerstein
  • First Published September 11, 2013
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