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Methods

Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding

Kevin Judd McKernan
Heather E. Peckham
Gina L. Costa
Stephen F. McLaughlin
Yutao Fu
Eric F. Tsung Christopher R. Clouser Cisyla Duncan Jeffrey K. Ichikawa Clarence C. Lee Zheng Zhang Swati S. Ranade Eileen T. Dimalanta Fiona C. Hyland Tanya D. Sokolsky Lei Zhang Andrew Sheridan Haoning Fu Cynthia L. Hendrickson Bin Li Lev Kotler Jeremy R. Stuart Joel A. Malek Jonathan M. Manning Alena A. Antipova Damon S. Perez Michael P. Moore Kathleen C. Hayashibara Michael R. Lyons Robert E. Beaudoin Brittany E. Coleman Michael W. Laptewicz Adam E. Sannicandro Michael D. Rhodes Rajesh K. Gottimukkala Shan Yang Vineet Bafna Ali Bashir Andrew MacBride Can Alkan Jeffrey M. Kidd
... [+36 authors] ...,
Evan E. Eichler
Martin G. Reese
Francisco M. De La Vega
Alan P. Blanchard

First Published June 22, 2009

LETTER

Comparative analysis of chicken chromosome 28 provides new clues to the evolutionary fragility of gene-rich vertebrate regions

Laurie Gordon
Shan Yang
Mary Tran-Gyamfi
Dan Baggott
Mari Christensen
Aaron Hamilton Richard Crooijmans
... [+2 authors] ...,
Martien Groenen
Susan Lucas
Ivan Ovcharenko
Lisa Stubbs

First Published October 5, 2007

LETTER

Insertions and Deletions Are Male Biased Too: A Whole-Genome Analysis in Rodents

Kateryna D. Makova
Shan Yang
Francesca Chiaromonte

First Published April 1, 2004

ARTICLE

Patterns of Insertions and Their Covariation With Substitutions in the Rat, Mouse, and Human Genomes

Shan Yang
Arian F. Smit
Scott Schwartz
Francesca Chiaromonte
Krishna M. Roskin
David Haussler
Webb Miller
Ross C. Hardison

First Published April 1, 2004

LETTER

Distinguishing Regulatory DNA From Neutral Sites

Laura Elnitski
Ross C. Hardison
Jia Li
Shan Yang
Diana Kolbe
Pallavi Eswara
... [+1 authors] ...,
Michael J. O'Connor
Scott Schwartz
Webb Miller
Francesca Chiaromonte

First Published January 1, 2003

ARTICLE

Covariation in Frequencies of Substitution, Deletion, Transposition, and Recombination During Eutherian Evolution

Ross C. Hardison
Krishna M. Roskin
Shan Yang
Mark Diekhans
W. James Kent
Ryan Weber Laura Elnitski Jia Li Michael O'Connor Diana Kolbe Scott Schwartz Terrence S. Furey Simon Whelan Nick Goldman
... [+9 authors] ...,
Arian Smit
Webb Miller
Francesca Chiaromonte
David Haussler

First Published January 1, 2003

ARTICLE

2006 expressed-sequence tags derived from human chromosome 7-enriched cDNA libraries.

J W Touchman
G G Bouffard
L A Weintraub
J R Idol
L Wang
C M Robbins
J C Nussbaum
M Lovett
E D Green

First Published March 1, 1997

ARTICLE

Isolation of cDNAs from the Cri-du-chat critical region by direct screening of a chromosome 5-specific cDNA library.

A D Simmons
J Overhauser
M Lovett

First Published February 1, 1997

ARTICLE

Identification and localization of the gene for EXTL, a third member of the multiple exostoses gene family.

C A Wise
G A Clines
H Massa
B J Trask
M Lovett

First Published January 1, 1997

ARTICLES

Human chromosome-specific cDNA libraries: new tools for gene identification and genome annotation.

R G Del Mastro
L Wang
A D Simmons
T D Gallardo
G A Clines
J A Ashley
... [+1 authors] ...,
C J Hilliard
J J Wasmuth
J D McPherson
M Lovett

First Published September 1, 1995