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Resource

GenomeVIP: a cloud platform for genomic variant discovery and interpretation

  • R. Jay Mashl
  • Adam D. Scott
  • Kuan-lin Huang
  • Matthew A. Wyczalkowski
  • Christopher J. Yoon
  • Beifang Niu Erin DeNardo Venkata D. Yellapantula Robert E. Handsaker Ken Chen Daniel C. Koboldt Kai Ye
  • ... [+7 authors] ...,
  • David Fenyö
  • Benjamin J. Raphael
  • Michael C. Wendl
  • Li Ding
  • First Published May 18, 2017
Method

TIGRA: A targeted iterative graph routing assembler for breakpoint assembly

  • Ken Chen
  • Lei Chen
  • Xian Fan
  • John Wallis
  • Li Ding
  • George Weinstock
  • First Published December 4, 2013
Research

Somatic neurofibromatosis type 1 (NF1) inactivation characterizes NF1-associated pilocytic astrocytoma

  • David H. Gutmann
  • Michael D. McLellan
  • Ibrahim Hussain
  • John W. Wallis
  • Lucinda L. Fulton
  • Robert S. Fulton Vincent Magrini Ryan Demeter Todd Wylie Cyriac Kandoth Jeffrey R. Leonard
  • ... [+6 authors] ...,
  • Abhijit Guha
  • Christopher A. Miller
  • Li Ding
  • Elaine R. Mardis
  • First Published December 5, 2012
Resource

MuSiC: Identifying mutational significance in cancer genomes

  • Nathan D. Dees
  • Qunyuan Zhang
  • Cyriac Kandoth
  • Michael C. Wendl
  • William Schierding
  • Daniel C. Koboldt Thomas B. Mooney Matthew B. Callaway
  • ... [+3 authors] ...,
  • David Dooling
  • Elaine R. Mardis
  • Richard K. Wilson
  • Li Ding
  • First Published July 3, 2012
Resource

VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing

  • Daniel C. Koboldt
  • Qunyuan Zhang
  • David E. Larson
  • Dong Shen
  • Michael D. McLellan
  • Ling Lin
  • ... [+1 authors] ...,
  • Christopher A. Miller
  • Elaine R. Mardis
  • Li Ding
  • Richard K. Wilson
  • First Published February 2, 2012
RESOURCE

PolyScan: An automatic indel and SNP detection approach to the analysis of human resequencing data

  • Ken Chen
  • Michael D. McLellan
  • Li Ding
  • Michael C. Wendl
  • Yumi Kasai
  • Richard K. Wilson
  • Elaine R. Mardis
  • First Published April 6, 2007
RESOURCE

EAnnot: A genome annotation tool using experimental evidence

  • Li Ding
  • Aniko Sabo
  • Nicolas Berkowicz
  • Rekha R. Meyer
  • Yoram Shotland
  • Mark R. Johnson
  • Kymberlie H. Pepin
  • Richard K. Wilson
  • John Spieth
  • First Published December 1, 2004
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