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Method

Quality assessment of long read data in multisample lrRNA-seq experiments using SQANTI-reads

  • Netanya Keil
  • Carolina Monzó
  • Lauren McIntyre
  • Ana Conesa
  • First Published March 3, 2025
Method

Analyzing rare mutations in metagenomes assembled using long and accurate reads

  • Marcus W. Fedarko
  • Mikhail Kolmogorov
  • Pavel A. Pevzner
  • First Published November 23, 2022
Method

Fast and accurate mapping of long reads to complete genome assemblies with VerityMap

  • Andrey V. Bzikadze
  • Alla Mikheenko
  • Pavel A. Pevzner
  • First Published November 15, 2022
Method

Automated annotation of human centromeres with HORmon

  • Olga Kunyavskaya
  • Tatiana Dvorkina
  • Andrey V. Bzikadze
  • Ivan A. Alexandrov
  • Pavel A. Pevzner
  • First Published May 11, 2022
Method

Variations in antibody repertoires correlate with vaccine responses

  • Yana Safonova
  • Sung Bong Shin
  • Luke Kramer
  • James Reecy
  • Corey T. Watson
  • Timothy P.L. Smith
  • Pavel A. Pevzner
  • First Published March 31, 2022
Research

V(DD)J recombination is an important and evolutionarily conserved mechanism for generating antibodies with unusually long CDR3s

  • Yana Safonova
  • Pavel A. Pevzner
  • First Published September 18, 2020
Corrigendum

Corrigendum: Human auditory ossicles as an alternative optimal source of ancient DNA

  • Kendra Sirak
  • Daniel Fernandes
  • Olivia Cheronet
  • Eadaoin Harney
  • Matthew Mah
  • Swapan Mallick Nadin Rohland Nicole Adamski Nasreen Broomandkhoshbacht Kimberly Callan Francesca Candilio Ann Marie Lawson Kirsten Mandl Jonas Oppenheimer Kristin Stewardson Fatma Zalzala Alexandra Anders Juraj Bartík Alfredo Coppa Tumen Dashtseveg Sándor Évinger Zdeněk Farkaš Tamás Hajdu Jamsranjav Bayarsaikhan Lauren McIntyre Vyacheslav Moiseyev Mercedes Okumura Ildikó Pap Michael Pietrusewsky Pál Raczky Alena Šefčáková Andrei Soficaru Tamás Szeniczey Béla Miklós Szőke Dennis Van Gerven
  • ... [+30 authors] ...,
  • Sergey Vasilyev
  • Lynne Bell
  • David Reich
  • Ron Pinhasi
  • First Published July 14, 2020
Method

Human auditory ossicles as an alternative optimal source of ancient DNA

  • Kendra Sirak
  • Daniel Fernandes
  • Olivia Cheronet
  • Eadaoin Harney
  • Matthew Mah
  • Swapan Mallick Nadin Rohland Nicole Adamski Nasreen Broomandkhoshbacht Kimberly Callan Francesca Candilio Ann Marie Lawson Kirsten Mandl Jonas Oppenheimer Kristin Stewardson Fatma Zalzala Alexandra Anders Juraj Bartík Alfredo Coppa Tumen Dashtseveg Sándor Évinger Zdeněk Farkaš Tamás Hajdu Jamsranjav Bayarsaikhan Lauren McIntyre Vyacheslav Moiseyev Mercedes Okumura Ildikó Pap Michael Pietrusewsky Pál Raczky Alena Šefčáková Andrei Soficaru Tamás Szeniczey Béla Miklós Szőke Dennis Van Gerven
  • ... [+30 authors] ...,
  • Sergey Vasilyev
  • Lynne Bell
  • David Reich
  • Ron Pinhasi
  • First Published February 25, 2020
Method

Plasmid detection and assembly in genomic and metagenomic data sets

  • Dmitry Antipov
  • Mikhail Raiko
  • Alla Lapidus
  • Pavel A. Pevzner
  • First Published May 2, 2019
Method

Detection and analysis of ancient segmental duplications in mammalian genomes

  • Lianrong Pu
  • Yu Lin
  • Pavel A. Pevzner
  • First Published May 7, 2018
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