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Resource

C. elegans embryonic transcriptome with tissue, time, and alternative splicing resolution" > The C. elegans embryonic transcriptome with tissue, time, and alternative splicing resolution

Adam D. Warner
Louis Gevirtzman
LaDeana W. Hillier
Brent Ewing
Robert H. Waterston

First Published May 23, 2019

Resource

C. elegans" > The time-resolved transcriptome of C. elegans

Max E. Boeck
Chau Huynh
Lou Gevirtzman
Owen A. Thompson
Guilin Wang
Dionna M. Kasper
Valerie Reinke
LaDeana W. Hillier
Robert H. Waterston

First Published August 16, 2016

Resource

Chlorocebus aethiops sabaeus)" > The genome of the vervet (Chlorocebus aethiops sabaeus)

Wesley C. Warren
Anna J. Jasinska
Raquel García-Pérez
Hannes Svardal
Chad Tomlinson
Mariano Rocchi Nicoletta Archidiacono Oronzo Capozzi Patrick Minx Michael J. Montague Kim Kyung LaDeana W. Hillier Milinn Kremitzki Tina Graves Colby Chiang Jennifer Hughes Nam Tran Yu Huang Vasily Ramensky Oi-wa Choi Yoon J. Jung Christopher A. Schmitt Nikoleta Juretic Jessica Wasserscheid Trudy R. Turner Roger W. Wiseman Jennifer J. Tuscher Julie A. Karl Jörn E. Schmitz Roland Zahn David H. O'Connor Eugene Redmond Alex Nisbett Béatrice Jacquelin Michaela C. Müller-Trutwin Jason M. Brenchley Michel Dione Martin Antonio Gary P. Schroth Jay R. Kaplan Matthew J. Jorgensen Gregg W.C. Thomas Matthew W. Hahn Brian J. Raney Bronwen Aken Rishi Nag Juergen Schmitz Gennady Churakov Angela Noll Roscoe Stanyon David Webb Francoise Thibaud-Nissen Magnus Nordborg Tomas Marques-Bonet
... [+49 authors] ...,
Ken Dewar
George M. Weinstock
Richard K. Wilson
Nelson B. Freimer

First Published September 16, 2015

Research

Evolution and diversity of copy number variation in the great ape lineage

Peter H. Sudmant
John Huddleston
Claudia R. Catacchio
Maika Malig
LaDeana W. Hillier
Carl Baker Kiana Mohajeri Ivanela Kondova Ronald E. Bontrop Stephan Persengiev Francesca Antonacci
... [+6 authors] ...,
Mario Ventura
Javier Prado-Martinez
Tomas Marques-Bonet
Evan E. Eichler

First Published July 3, 2013

Resource

Caenorhabditis elegans" > The million mutation project: A new approach to genetics in Caenorhabditis elegans

Owen Thompson
Mark Edgley
Pnina Strasbourger
Stephane Flibotte
Brent Ewing
Ryan Adair Vinci Au Iasha Chaudhry Lisa Fernando Harald Hutter Armelle Kieffer Joanne Lau Norris Lee Angela Miller Greta Raymant Bin Shen Jay Shendure Jon Taylor
... [+13 authors] ...,
Emily H. Turner
LaDeana W. Hillier
Donald G. Moerman
Robert H. Waterston

First Published June 25, 2013

Resource

C. elegans reveals promoter and enhancer architectures" > The landscape of RNA polymerase II transcription initiation in C. elegans reveals promoter and enhancer architectures

Ron A.-J. Chen
Thomas A. Down
Przemyslaw Stempor
Q. Brent Chen
Thea A. Egelhofer
LaDeana W. Hillier
Tess E. Jeffers
Julie Ahringer

First Published April 2, 2013

Research

C. elegans trans-splicing" > A global analysis of C. elegans trans-splicing

Mary Ann Allen
LaDeana W. Hillier
Robert H. Waterston
Thomas Blumenthal

First Published December 22, 2010

Method

C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data" > Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data

Zhi John Lu
Kevin Y. Yip
Guilin Wang
Chong Shou
LaDeana W. Hillier
Ekta Khurana Ashish Agarwal Raymond Auerbach Joel Rozowsky Chao Cheng Masaomi Kato David M. Miller Frank Slack
... [+8 authors] ...,
Michael Snyder
Robert H. Waterston
Valerie Reinke
Mark B. Gerstein

First Published December 22, 2010

Method

Genome assembly quality: Assessment and improvement using the neutral indel model

Stephen Meader
LaDeana W. Hillier
Devin Locke
Chris P. Ponting
Gerton Lunter

First Published March 19, 2010

Methods

Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding

Kevin Judd McKernan
Heather E. Peckham
Gina L. Costa
Stephen F. McLaughlin
Yutao Fu
Eric F. Tsung Christopher R. Clouser Cisyla Duncan Jeffrey K. Ichikawa Clarence C. Lee Zheng Zhang Swati S. Ranade Eileen T. Dimalanta Fiona C. Hyland Tanya D. Sokolsky Lei Zhang Andrew Sheridan Haoning Fu Cynthia L. Hendrickson Bin Li Lev Kotler Jeremy R. Stuart Joel A. Malek Jonathan M. Manning Alena A. Antipova Damon S. Perez Michael P. Moore Kathleen C. Hayashibara Michael R. Lyons Robert E. Beaudoin Brittany E. Coleman Michael W. Laptewicz Adam E. Sannicandro Michael D. Rhodes Rajesh K. Gottimukkala Shan Yang Vineet Bafna Ali Bashir Andrew MacBride Can Alkan Jeffrey M. Kidd
... [+36 authors] ...,
Evan E. Eichler
Martin G. Reese
Francisco M. De La Vega
Alan P. Blanchard

First Published June 22, 2009

Resource

C. elegans" > Massively parallel sequencing of the polyadenylated transcriptome of C. elegans

LaDeana W. Hillier
Valerie Reinke
Philip Green
Martin Hirst
Marco A. Marra
Robert H. Waterston

First Published January 30, 2009

LETTER

Comparative analysis of chicken chromosome 28 provides new clues to the evolutionary fragility of gene-rich vertebrate regions

Laurie Gordon
Shan Yang
Mary Tran-Gyamfi
Dan Baggott
Mari Christensen
Aaron Hamilton Richard Crooijmans
... [+2 authors] ...,
Martien Groenen
Susan Lucas
Ivan Ovcharenko
Lisa Stubbs

First Published October 5, 2007

Methods

Physical map-assisted whole-genome shotgun sequence assemblies

René L. Warren
Dmitry Varabei
Darren Platt
Xiaoqiu Huang
David Messina
Shiaw-Pyng Yang James W. Kronstad Martin Krzywinski Wesley C. Warren John W. Wallis LaDeana W. Hillier Asif T. Chinwalla Jacqueline E. Schein
... [+8 authors] ...,
Asim S. Siddiqui
Marco A. Marra
Richard K. Wilson
Steven J.M. Jones

First Published June 1, 2006

RESOURCE

A comprehensive catalog of human KRAB-associated zinc finger genes: Insights into the evolutionary history of a large family of transcriptional repressors

Stuart Huntley
Daniel M. Baggott
Aaron T. Hamilton
Mary Tran-Gyamfi
Shan Yang
Joomyeong Kim
Laurie Gordon
Elbert Branscomb
Lisa Stubbs

First Published April 10, 2006

PERSPECTIVE

C. elegans: So many genes, such a little worm" > Genomics in C. elegans: So many genes, such a little worm

LaDeana W. Hillier
Alan Coulson
John I. Murray
Zhirong Bao
John E. Sulston
Robert H. Waterston

First Published December 8, 2005

ARTICLE

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

Adam Siepel
Gill Bejerano
Jakob S. Pedersen
Angie S. Hinrichs
Minmei Hou
Kate Rosenbloom Hiram Clawson John Spieth LaDeana W. Hillier Stephen Richards George M. Weinstock Richard K. Wilson
... [+7 authors] ...,
Richard A. Gibbs
W. James Kent
Webb Miller
David Haussler

First Published July 15, 2005

LETTER

Analysis of Human mRNAs With the Reference Genome Sequence Reveals Potential Errors, Polymorphisms, and RNA Editing

Terrence S. Furey
Mark Diekhans
Yontao Lu
Tina A. Graves
Lachlan Oddy
Jennifer Randall-Maher
LaDeana W. Hillier
Richard K. Wilson
David Haussler

First Published October 15, 2004

LETTER

Insertions and Deletions Are Male Biased Too: A Whole-Genome Analysis in Rodents

Kateryna D. Makova
Shan Yang
Francesca Chiaromonte

First Published April 1, 2004

ARTICLE

Patterns of Insertions and Their Covariation With Substitutions in the Rat, Mouse, and Human Genomes

Shan Yang
Arian F. Smit
Scott Schwartz
Francesca Chiaromonte
Krishna M. Roskin
David Haussler
Webb Miller
Ross C. Hardison

First Published April 1, 2004

METHODS

Software for Automated Analysis of DNA Fingerprinting Gels

Daniel R. Fuhrmann
Martin I. Krzywinski
Readman Chiu
Parvaneh Saeedi
Jacqueline E. Schein
Ian E. Bosdet Asif Chinwalla LaDeana W. Hillier
... [+3 authors] ...,
Robert H. Waterston
John D. McPherson
Steven J.M. Jones
Marco A. Marra

First Published May 1, 2003

LETTER

Distinguishing Regulatory DNA From Neutral Sites

Laura Elnitski
Ross C. Hardison
Jia Li
Shan Yang
Diana Kolbe
Pallavi Eswara
... [+1 authors] ...,
Michael J. O'Connor
Scott Schwartz
Webb Miller
Francesca Chiaromonte

First Published January 1, 2003

ARTICLE

Covariation in Frequencies of Substitution, Deletion, Transposition, and Recombination During Eutherian Evolution

Ross C. Hardison
Krishna M. Roskin
Shan Yang
Mark Diekhans
W. James Kent
Ryan Weber Laura Elnitski Jia Li Michael O'Connor Diana Kolbe Scott Schwartz Terrence S. Furey Simon Whelan Nick Goldman
... [+9 authors] ...,
Arian Smit
Webb Miller
Francesca Chiaromonte
David Haussler

First Published January 1, 2003

ARTICLE

Saccharomyces Genomes to Identify Functional Elements by Comparative DNA Sequence Analysis" > Surveying Saccharomyces Genomes to Identify Functional Elements by Comparative DNA Sequence Analysis

Paul F. Cliften
LaDeana W. Hillier
Lucinda Fulton
Tina Graves
Tracie Miner
Warren R. Gish
Robert H. Waterston
Mark Johnston

First Published July 1, 2001

METHODS

Theories and Applications for Sequencing Randomly Selected Clones

Michael C. Wendl
Marco A. Marra
LaDeana W. Hillier
Asif T. Chinwalla
Richard K. Wilson
Robert H. Waterston

First Published January 18, 2001

LETTER

High Throughput Fingerprint Analysis of Large-Insert Clones

Marco A. Marra
Tamara A. Kucaba
Nicole L. Dietrich
Eric D. Green
Buddy Brownstein
Richard K. Wilson
... [+1 authors] ...,
Ken M. McDonald
LaDeana W. Hillier
John D. McPherson
Robert H. Waterston

First Published November 1, 1997