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Resource

A map of enhancer regions in primary human neural progenitor cells using capture STARR-seq

  • Sophia C. Gaynor-Gillett
  • Lijun Cheng
  • Manman Shi
  • Jason Liu
  • Gaoyuan Wang
  • Megan Spector Qiuyu Guo Le Qi Mary Flaherty Martha Wall Ahyeon Hwang Mengting Gu Zhanlin Chen Yuhang Chen Jennifer R. Moran Jing Zhang
  • ... [+11 authors] ...,
  • Donghoon Lee
  • Mark Gerstein
  • Daniel Geschwind
  • Kevin P. White
  • First Published July 11, 2025
Research

N6-methyladenosine in primates" > Evolution of transcript modification by N6-methyladenosine in primates

  • Lijia Ma
  • Boxuan Zhao
  • Kai Chen
  • Amber Thomas
  • Jigyasa H. Tuteja
  • Xin He
  • Chuan He
  • Kevin P. White
  • First Published January 4, 2017
Resource

Drosophila melanogaster" > Diverse patterns of genomic targeting by transcriptional regulators in Drosophila melanogaster

  • Matthew Slattery
  • Lijia Ma
  • Rebecca F. Spokony
  • Robert K. Arthur
  • Pouya Kheradpour
  • Anshul Kundaje Nicolas Nègre Alex Crofts Ryan Ptashkin Jennifer Zieba Alexander Ostapenko Sarah Suchy Alec Victorsen Nader Jameel A. Jason Grundstad Wenxuan Gao Jennifer R. Moran
  • ... [+12 authors] ...,
  • E. Jay Rehm
  • Robert L. Grossman
  • Manolis Kellis
  • Kevin P. White
  • First Published July 1, 2014
Research

Evolution of H3K27me3-marked chromatin is linked to gene expression evolution and to patterns of gene duplication and diversification

  • Robert K. Arthur
  • Lijia Ma
  • Matthew Slattery
  • Rebecca F. Spokony
  • Alexander Ostapenko
  • Nicolas Nègre
  • Kevin P. White
  • First Published July 1, 2014
Research

cis-mediated silencing in somatic cells" > Systematic mapping of occluded genes by cell fusion reveals prevalence and stability of cis-mediated silencing in somatic cells

  • Timothy J. Looney
  • Li Zhang
  • Chih-Hsin Chen
  • Jae Hyun Lee
  • Sheila Chari
  • Frank Fuxiang Mao Mattia Pelizzola Lu Zhang Ryan Lister Samuel W. Baker Croydon J. Fernandes Jedidiah Gaetz Kara M. Foshay Kayla L. Clift Zhenyu Zhang Wei-Qiang Li Eric J. Vallender Ulrich Wagner Jane Yuxia Qin Katelyn J. Michelini Branimir Bugarija Donghyun Park Emmanuel Aryee Thomas Stricker Jie Zhou Kevin P. White Bing Ren
  • ... [+22 authors] ...,
  • Gary P. Schroth
  • Joseph R. Ecker
  • Andy Peng Xiang
  • Bruce T. Lahn
  • First Published December 5, 2013
Resource

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

  • Stephen G. Landt
  • Georgi K. Marinov
  • Anshul Kundaje
  • Pouya Kheradpour
  • Florencia Pauli
  • Serafim Batzoglou Bradley E. Bernstein Peter Bickel James B. Brown Philip Cayting Yiwen Chen Gilberto DeSalvo Charles Epstein Katherine I. Fisher-Aylor Ghia Euskirchen Mark Gerstein Jason Gertz Alexander J. Hartemink Michael M. Hoffman Vishwanath R. Iyer Youngsook L. Jung Subhradip Karmakar Manolis Kellis Peter V. Kharchenko Qunhua Li Tao Liu X. Shirley Liu Lijia Ma Aleksandar Milosavljevic Richard M. Myers Peter J. Park Michael J. Pazin Marc D. Perry Debasish Raha Timothy E. Reddy Joel Rozowsky Noam Shoresh Arend Sidow Matthew Slattery John A. Stamatoyannopoulos Michael Y. Tolstorukov Kevin P. White Simon Xi
  • ... [+38 authors] ...,
  • Peggy J. Farnham
  • Jason D. Lieb
  • Barbara J. Wold
  • Michael Snyder
  • First Published September 5, 2012
Research

Drosophila and other metazoa" > Evidence of abundant stop codon readthrough in Drosophila and other metazoa

  • Irwin Jungreis
  • Michael F. Lin
  • Rebecca Spokony
  • Clara S. Chan
  • Nicolas Negre
  • Alec Victorsen
  • Kevin P. White
  • Manolis Kellis
  • First Published October 12, 2011
Letter

Genomic mapping of binding regions for the Ecdysone receptor protein complex

  • Zareen Gauhar
  • Ling V. Sun
  • Sujun Hua
  • Christopher E. Mason
  • Florian Fuchs
  • Tong-Ruei Li
  • Michael Boutros
  • Kevin P. White
  • First Published February 23, 2009
LETTER

Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles

  • Yoav Gilad
  • Scott A. Rifkin
  • Paul Bertone
  • Mark Gerstein
  • Kevin P. White
  • First Published May 2, 2005
ARTICLE

Drosophila pseudoobscura: Chromosomal, gene, and cis-element evolution" > Comparative genome sequencing of Drosophila pseudoobscura: Chromosomal, gene, and cis-element evolution

  • Stephen Richards
  • Yue Liu
  • Brian R. Bettencourt
  • Pavel Hradecky
  • Stan Letovsky
  • Rasmus Nielsen Kevin Thornton Melissa J. Hubisz Rui Chen Richard P. Meisel Olivier Couronne Sujun Hua Mark A. Smith Peili Zhang Jing Liu Harmen J. Bussemaker Marinus F. van Batenburg Sally L. Howells Steven E. Scherer Erica Sodergren Beverly B. Matthews Madeline A. Crosby Andrew J. Schroeder Daniel Ortiz-Barrientos Catharine M. Rives Michael L. Metzker Donna M. Muzny Graham Scott David Steffen David A. Wheeler Kim C. Worley Paul Havlak K. James Durbin Amy Egan Rachel Gill Jennifer Hume Margaret B. Morgan George Miner Cerissa Hamilton Yanmei Huang Lenée Waldron Daniel Verduzco Kerstin P. Clerc-Blankenburg Inna Dubchak Mohamed A.F. Noor Wyatt Anderson Kevin P. White Andrew G. Clark
  • ... [+43 authors] ...,
  • Stephen W. Schaeffer
  • William Gelbart
  • George M. Weinstock
  • Richard A. Gibbs
  • First Published January 3, 2005
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