Search | Genome Research

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Research

Callithrix jacchus genome" > Discovery of a new repeat family in the Callithrix jacchus genome

Miriam K. Konkel
Brygg Ullmer
Erika L. Arceneaux
Sreeja Sanampudi
Sarah A. Brantley
Robert Hubley
Arian F.A. Smit
Mark A. Batzer

First Published February 25, 2016

Method

Alu insertions in diverse human populations" > Mobile element scanning (ME-Scan) identifies thousands of novel Alu insertions in diverse human populations

David J. Witherspoon
Yuhua Zhang
Jinchuan Xing
W. Scott Watkins
Hongseok Ha
Mark A. Batzer
Lynn B. Jorde

First Published April 18, 2013

Perspective

Reading TE leaves: New approaches to the identification of transposable element insertions

David A. Ray
Mark A. Batzer

First Published June 1, 2011

Letter

5′-Transducing SVA retrotransposon groups spread efficiently throughout the human genome

Annette Damert
Julija Raiz
Axel V. Horn
Johannes Löwer
Hui Wang
Jinchuan Xing
Mark A. Batzer
Roswitha Löwer
Gerald G. Schumann

First Published August 3, 2009

Letter

Mobile elements create structural variation: Analysis of a complete human genome

Jinchuan Xing
Yuhua Zhang
Kyudong Han
Abdel Halim Salem
Shurjo K. Sen
Chad D. Huff Qiong Zhou
... [+2 authors] ...,
Ewen F. Kirkness
Samuel Levy
Mark A. Batzer
Lynn B. Jorde

First Published May 13, 2009

LETTER

Comparative sequence analysis of primate subtelomeres originating from a chromosome fission event

M. Katharine Rudd
RaeLynn M. Endicott
Cynthia Friedman
Megan Walker
Janet M. Young
Kazutoyo Osoegawa
Pieter J. de Jong
Eric D. Green
Barbara J. Trask

First Published October 24, 2008

LETTER

The amphioxus genome illuminates vertebrate origins and cephalochordate biology

Linda Z. Holland
Ricard Albalat
Kaoru Azumi
Èlia Benito-Gutiérrez
Matthew J. Blow
Marianne Bronner-Fraser Frederic Brunet Thomas Butts Simona Candiani Larry J. Dishaw David E.K. Ferrier Jordi Garcia-Fernàndez Jeremy J. Gibson-Brown Carmela Gissi Adam Godzik Finn Hallböök Dan Hirose Kazuyoshi Hosomichi Tetsuro Ikuta Hidetoshi Inoko Masanori Kasahara Jun Kasamatsu Takeshi Kawashima Ayuko Kimura Masaaki Kobayashi Zbynek Kozmik Kaoru Kubokawa Vincent Laudet Gary W. Litman Alice C. McHardy Daniel Meulemans Masaru Nonaka Robert P. Olinski Zeev Pancer Len A. Pennacchio Mario Pestarino Jonathan P. Rast Isidore Rigoutsos Marc Robinson-Rechavi Graeme Roch Hidetoshi Saiga Yasunori Sasakura Masanobu Satake Yutaka Satou Michael Schubert Nancy Sherwood Takashi Shiina Naohito Takatori Javier Tello Pavel Vopalensky Shuichi Wada Anlong Xu Yuzhen Ye Keita Yoshida Fumiko Yoshizaki Jr-Kai Yu Qing Zhang Christian M. Zmasek Pieter J. de Jong Kazutoyo Osoegawa
... [+55 authors] ...,
Nicholas H. Putnam
Daniel S. Rokhsar
Noriyuki Satoh
Peter W.H. Holland

First Published June 18, 2008

RESOURCE

Islands of euchromatin-like sequence and expressed polymorphic sequences within the short arm of human chromosome 21

Robert Lyle
Paola Prandini
Kazutoyo Osoegawa
Boudewijn ten Hallers
Sean Humphray
Baoli Zhu Eduardo Eyras Robert Castelo Christine P. Bird Sarantos Gagos Carol Scott Antony Cox Samuel Deutsch Catherine Ucla Marc Cruts Sophie Dahoun Xinwei She Frederique Bena Sheng-Yue Wang Christine Van Broeckhoven Evan E. Eichler Roderic Guigo
... [+17 authors] ...,
Jane Rogers
Pieter J. de Jong
Alexandre Reymond
Stylianos E. Antonarakis

First Published September 25, 2007

LETTER

Monodelphis domestica" > Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica

Andrew J. Gentles
Matthew J. Wakefield
Oleksiy Kohany
Wanjun Gu
Mark A. Batzer
David D. Pollock
Jerzy Jurka

First Published May 10, 2007

LETTER

Alu amplification" > Under the genomic radar: The Stealth model of Alu amplification

Kyudong Han
Jinchuan Xing
Hui Wang
Dale J. Hedges
Randall K. Garber
Richard Cordaux
Mark A. Batzer

First Published May 2, 2005

LETTER

Human, Mouse, and Rat Genome Large-Scale Rearrangements: Stability Versus Speciation

Shaying Zhao
Jyoti Shetty
Lihua Hou
Arthur Delcher
Baoli Zhu
Kazutoyo Osoegawa
... [+1 authors] ...,
Pieter de Jong
William C. Nierman
Robert L. Strausberg
Claire M. Fraser

First Published September 13, 2004

LETTER

Alu Mobilization and Polymorphism Among the Human and Chimpanzee Lineages" > Differential Alu Mobilization and Polymorphism Among the Human and Chimpanzee Lineages

Dale J. Hedges
Pauline A. Callinan
Richard Cordaux
Jinchuan Xing
Erin Barnes
Mark A. Batzer

First Published June 1, 2004

RESOURCE

Complete MHC Haplotype Sequencing for Common Disease Gene Mapping

C. Andrew Stewart
Roger Horton
Richard J.N. Allcock
Jennifer L. Ashurst
Alexey M. Atrazhev
Penny Coggill Ian Dunham Simon Forbes Karen Halls Joanna M.M. Howson Sean J. Humphray Sarah Hunt Andrew J. Mungall Kazutoyo Osoegawa Sophie Palmer Anne N. Roberts Jane Rogers Sarah Sims Yu Wang Laurens G. Wilming John F. Elliott Pieter J. de Jong
... [+17 authors] ...,
Stephen Sawcer
John A. Todd
John Trowsdale
Stephan Beck

First Published May 12, 2004

RESOURCE

BAC Resources for the Rat Genome Project

Kazutoyo Osoegawa
Baoli Zhu
Chung Li Shu
Teresa Ren
Qing Cao
Gery M. Vessere
... [+1 authors] ...,
Michelle M. Lutz
Michael I. Jensen-Seaman
Shaying Zhao
Pieter J. de Jong

First Published April 1, 2004

RESOURCE

Integrated and Sequence-Ordered BAC- and YAC-Based Physical Maps for the Rat Genome

Martin Krzywinski
John Wallis
Claudia Gösele
Ian Bosdet
Readman Chiu
Tina Graves Oliver Hummel Dan Layman Carrie Mathewson Natasja Wye Baoli Zhu Derek Albracht Jennifer Asano Sarah Barber Mabel Brown-John Susanna Chan Steve Chand Alison Cloutier Jonathon Davito Chris Fjell Tony Gaige Detlev Ganten Noreen Girn Kurtis Guggenheimer Heinz Himmelbauer Thomas Kreitler Stephen Leach Darlene Lee Hans Lehrach Michael Mayo Kelly Mead Teika Olson Pawan Pandoh Anna-Liisa Prabhu Heesun Shin Simone Tänzer Jason Thompson Miranda Tsai Jason Walker George Yang Mandeep Sekhon LaDeana Hillier Heike Zimdahl Andre Marziali Kazutoyo Osoegawa Shaying Zhao Asim Siddiqui Pieter J. de Jong Wes Warren Elaine Mardis John D. McPherson Richard Wilson
... [+47 authors] ...,
Norbert Hübner
Steven Jones
Marco Marra
Jacqueline Schein

First Published April 1, 2004

LETTER

SIM2 Interval are Frequently Functional" > Noncoding Sequences Conserved in a Limited Number of Mammals in the SIM2 Interval are Frequently Functional

Kelly A. Frazer
Heng Tao
Kazutoyo Osoegawa
Pieter J. de Jong
Xiyin Chen
Mark F. Doherty
David R. Cox

First Published February 12, 2004

RESOURCE

A Cattle–Human Comparative Map Built with Cattle BAC-Ends and Human Genome Sequence

Denis M. Larkin
Annelie Everts-van der Wind
Mark Rebeiz
Peter A. Schweitzer
Sharon Bachman
Cheryl Green Chris L. Wright Edhilvia J. Campos Leslie D. Benson Jennifer Edwards Lei Liu
... [+6 authors] ...,
Kazutoyo Osoegawa
James E. Womack
Pieter J. de Jong
Harris A. Lewin

First Published August 5, 2003

LETTER

Alu Insertion Polymorphisms" > Genetic Variation Among World Populations: Inferences From 100 Alu Insertion Polymorphisms

W. Scott Watkins
Alan R. Rogers
Christopher T. Ostler
Steve Wooding
Michael J. Bamshad
Anna-Marie E. Brassington Marion L. Carroll Son V. Nguyen Jerilyn A. Walker B.V. Ravi Prasad
... [+5 authors] ...,
P. Govinda Reddy
Pradipta K. Das
Mark A. Batzer
Lynn B. Jorde

First Published June 12, 2003

LETTER

Y Chromosome STR Haplotypes and the Genetic Structure of U.S. Populations of African, European, and Hispanic Ancestry

Manfred Kayser
Silke Brauer
Hiltrud Schädlich
Mechthild Prinz
Mark A. Batzer
Peter A. Zimmerman
B. A. Boatin
Mark Stoneking

First Published April 1, 2003

REVIEW

Mammalian Retroelements

Prescott L. Deininger
Mark A. Batzer

First Published October 1, 2002

LETTER

Active Alu Element “A-Tails”: Size Does Matter

Astrid M. Roy-Engel
Abdel-Halim Salem
Oluwatosin O. Oyeniran
Lisa Deininger
Dale J. Hedges
Gail E. Kilroy
Mark A. Batzer
Prescott L. Deininger

First Published August 21, 2002

LETTER

Patterns of Human Diversity, within and among Continents, Inferred from Biallelic DNA Polymorphisms

Chiara Romualdi
David Balding
Ivane S. Nasidze
Gregory Risch
Myles Robichaux
Stephen T. Sherry
Mark Stoneking
Mark A. Batzer
Guido Barbujani

First Published April 1, 2002

LETTER

Genetic Evidence on the Origins of Indian Caste Populations

Michael Bamshad
Toomas Kivisild
W. Scott Watkins
Mary E. Dixon
Chris E. Ricker
Baskara B. Rao J. Mastan Naidu B.V. Ravi Prasad P. Govinda Reddy Arani Rasanayagam Surinder S. Papiha Richard Villems Alan J. Redd Michael F. Hammer
... [+9 authors] ...,
Son V. Nguyen
Marion L. Carroll
Mark A. Batzer
Lynn B. Jorde

First Published May 8, 2001

RESOURCE

A Bacterial Artificial Chromosome Library for Sequencing the Complete Human Genome

Kazutoyo Osoegawa
Aaron G. Mammoser
Chenyan Wu
Eirik Frengen
Changjiang Zeng
Joseph J. Catanese
Pieter J. de Jong

First Published March 1, 2001

LETTER

Reading between the LINEs: Human Genomic Variation Induced by LINE-1 Retrotransposition

Fang-miin Sheen
Stephen T. Sherry
Gregory M. Risch
Myles Robichaux
Ivane Nasidze
Mark Stoneking
Mark A. Batzer
Gary D. Swergold

First Published October 1, 2000

ARTICLE

Potential Gene Conversion and Source Genes for Recently Integrated Alu Elements

Astrid M. Roy
Marion L. Carroll
Son V. Nguyen
Abdel-Halim Salem
Michael Oldridge
Andrew O. M. Wilkie
Mark A. Batzer
Prescott L. Deininger

First Published October 1, 2000

RESOURCE

Bacterial Artificial Chromosome Libraries for Mouse Sequencing and Functional Analysis

Kazutoyo Osoegawa
Minako Tateno
Peng Yeong Woon
Eirik Frengen
Aaron G. Mammoser
Joseph J. Catanese
Yoshihide Hayashizaki
Pieter J. de Jong

First Published January 1, 2000

LETTER

AluInsertion Polymorphisms and Human Evolution: Evidence for a Larger Population Size in Africa " > AluInsertion Polymorphisms and Human Evolution: Evidence for a Larger Population Size in Africa

Mark Stoneking
Jennifer J. Fontius
Stephanie L. Clifford
Himla Soodyall
Santosh S. Arcot
Nilmani Saha
... [+1 authors] ...,
Trefor Jenkins
Mohammad A. Tahir
Prescott L. Deininger
Mark A. Batzer

First Published November 1, 1997

INSIGHT/OUTLOOK

Modeling Human Evolution—To Tree or Not to Tree?

Stephen T. Sherry
Mark A. Batzer

First Published October 1, 1997