Research
3C sites in poly(A) RNA" > Nanopore direct RNA sequencing reveals METTL2A-mediated m3C sites in poly(A) RNA
- First Published October 30, 2025
Method
Accurate sequencing of DNA motifs able to form alternative (non-B) structures
- First Published July 11, 2023
Research
Selection and thermostability suggest G-quadruplexes are novel functional elements of the human genome
- First Published June 29, 2021
Research
Positive selective sweeps of epigenetic mutations regulating specialized metabolites in plants
- First Published May 18, 2021
Research
Long-read sequencing for non-small-cell lung cancer genomes
- First Published September 4, 2020
Method
Metabolic labeling of RNA using multiple ribonucleoside analogs enables the simultaneous evaluation of RNA synthesis and degradation rates
- First Published August 25, 2020
Research
Long-read sequencing technology indicates genome-wide effects of non-B DNA on polymerization speed and error rate
- First Published November 6, 2018
Corrigendum
Plasmodium falciparum" > Corrigendum: Interactive transcriptome analysis of malaria patients and infecting Plasmodium falciparum
- First Published August 1, 2018
Research
Long terminal repeats power evolution of genes and gene expression programs in mammalian oocytes and zygotes
- First Published May 18, 2017
Research
A GC-rich sequence feature in the 3′ UTR directs UPF1-dependent mRNA decay in mammalian cells
- First Published December 9, 2016
Corrigendum
Corrigendum: A genome-wide analysis of common fragile sites: What features determine chromosomal instability in the human genome?
- First Published October 3, 2016
Method
A time- and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla Y
- First Published March 2, 2016
Resource
Ciona intestinalis" > Genome-wide identification and characterization of transcription start sites and promoters in the tunicate Ciona intestinalis
- First Published December 14, 2015
Method
Accurate typing of short tandem repeats from genome-wide sequencing data and its applications
- First Published March 30, 2015
Research
Plasmodium falciparum" > Interactive transcriptome analysis of malaria patients and infecting Plasmodium falciparum
- First Published August 4, 2014
Resource
Coelacanth genomes reveal signatures for evolutionary transition from water to land
- First Published July 22, 2013
Research
The origin, evolution, and functional impact of short insertion–deletion variants identified in 179 human genomes
- First Published March 11, 2013
Research
High-resolution DNA methylome analysis of primordial germ cells identifies gender-specific reprogramming in mice
- First Published February 14, 2013
Research
Genome-wide genetic variations are highly correlated with proximal DNA methylation patterns
- First Published June 11, 2012
Research
A genome-wide analysis of common fragile sites: What features determine chromosomal instability in the human genome?
- First Published March 28, 2012
Method
Genome-wide determination of RNA stability reveals hundreds of short-lived noncoding transcripts in mammals
- First Published February 27, 2012
Research
A matter of life or death: How microsatellites emerge in and vanish from the human genome
- First Published October 12, 2011
Resource
Genome-wide characterization of transcriptional start sites in humans by integrative transcriptome analysis
- First Published March 3, 2011
Research
Nucleotide composition-linked divergence of vertebrate core promoter architecture
- First Published January 10, 2011
Research
The (r)evolution of SINE versus LINE distributions in primate genomes: Sex chromosomes are important
- First Published March 10, 2010
Letter
Ride the wavelet: A multiscale analysis of genomic contexts flanking small insertions and deletions
- First Published June 5, 2009
LETTER
The genome-wide determinants of human and chimpanzee microsatellite evolution
- First Published November 21, 2007
RESOURCE
A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly
- First Published June 13, 2007
LETTER
Distinct class of putative “non-conserved” promoters in humans: Comparative studies of alternative promoters of human and mouse genes
- First Published June 13, 2007
LETTER
Toxoplasma gondii" > Common inheritance of chromosome Ia associated with clonal expansion of Toxoplasma gondii
- First Published August 10, 2006
LETTER
Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes
- First Published December 12, 2005
LETTER
Analysis of Small Human Proteins Reveals the Translation of Upstream Open Reading Frames of mRNAs
- First Published October 15, 2004
LETTER
Sequence Comparison of Human and Mouse Genes Reveals a Homologous Block Structure in the Promoter Regions
- First Published September 1, 2004
LETTER
Insertions and Deletions Are Male Biased Too: A Whole-Genome Analysis in Rodents
- First Published April 1, 2004
LETTER
Divergence in the Spatial Pattern of Gene Expression Between Human Duplicate Genes
- First Published July 1, 2003
RESOURCE
Fugu ESTs: New Resources for Transcription Analysis and Genome Annotation" > Fugu ESTs: New Resources for Transcription Analysis and Genome Annotation
- First Published January 1, 2003
REPORT
Identification and Characterization of the Potential Promoter Regions of 1031 Kinds of Human Genes
- First Published April 11, 2001
