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Research

Toxoplasma gondii and identifies emerging copy number variants in sexual recombinants" > Third-generation sequencing revises the molecular karyotype for Toxoplasma gondii and identifies emerging copy number variants in sexual recombinants

  • Jing Xia
  • Aarthi Venkat
  • Rachel E. Bainbridge
  • Michael L. Reese
  • Karine G. Le Roch
  • Ferhat Ay
  • Jon P. Boyle
  • First Published April 27, 2021
Corrigendum

Corrigendum: Functional annotation of human long noncoding RNAs via molecular phenotyping

  • Jordan A. Ramilowski
  • Chi Wai Yip
  • Saumya Agrawal
  • Jen-Chien Chang
  • Yari Ciani
  • Ivan V. Kulakovskiy Mickaël Mendez Jasmine Li Ching Ooi John F. Ouyang Nick Parkinson Andreas Petri Leonie Roos Jessica Severin Kayoko Yasuzawa Imad Abugessaisa Altuna Akalin Ivan V. Antonov Erik Arner Alessandro Bonetti Hidemasa Bono Beatrice Borsari Frank Brombacher Christopher J.F. Cameron Carlo Vittorio Cannistraci Ryan Cardenas Melissa Cardon Howard Chang Josée Dostie Luca Ducoli Alexander Favorov Alexandre Fort Diego Garrido Noa Gil Juliette Gimenez Reto Guler Lusy Handoko Jayson Harshbarger Akira Hasegawa Yuki Hasegawa Kosuke Hashimoto Norihito Hayatsu Peter Heutink Tetsuro Hirose Eddie L. Imada Masayoshi Itoh Bogumil Kaczkowski Aditi Kanhere Emily Kawabata Hideya Kawaji Tsugumi Kawashima S. Thomas Kelly Miki Kojima Naoto Kondo Haruhiko Koseki Tsukasa Kouno Anton Kratz Mariola Kurowska-Stolarska Andrew Tae Jun Kwon Jeffrey Leek Andreas Lennartsson Marina Lizio Fernando López-Redondo Joachim Luginbühl Shiori Maeda Vsevolod J. Makeev Luigi Marchionni Yulia A. Medvedeva Aki Minoda Ferenc Müller Manuel Muñoz-Aguirre Mitsuyoshi Murata Hiromi Nishiyori Kazuhiro R. Nitta Shuhei Noguchi Yukihiko Noro Ramil Nurtdinov Yasushi Okazaki Valerio Orlando Denis Paquette Callum J.C. Parr Owen J.L. Rackham Patrizia Rizzu Diego Fernando Sánchez Martinez Albin Sandelin Pillay Sanjana Colin A.M. Semple Youtaro Shibayama Divya M. Sivaraman Takahiro Suzuki Suzannah C. Szumowski Michihira Tagami Martin S. Taylor Chikashi Terao Malte Thodberg Supat Thongjuea Vidisha Tripathi Igor Ulitsky Roberto Verardo Ilya E. Vorontsov Chinatsu Yamamoto Robert S. Young J. Kenneth Baillie Alistair R.R. Forrest Roderic Guigó Michael M. Hoffman Chung Chau Hon Takeya Kasukawa Sakari Kauppinen Juha Kere Boris Lenhard Claudio Schneider Harukazu Suzuki
  • ... [+107 authors] ...,
  • Ken Yagi
  • Michiel J.L. de Hoon
  • Jay W. Shin
  • Piero Carninci
  • First Published September 14, 2020
Resource

Functional annotation of human long noncoding RNAs via molecular phenotyping

  • Jordan A. Ramilowski
  • Chi Wai Yip
  • Saumya Agrawal
  • Jen-Chien Chang
  • Yari Ciani
  • Ivan V. Kulakovskiy Mickaël Mendez Jasmine Li Ching Ooi John F. Ouyang Nick Parkinson Andreas Petri Leonie Roos Jessica Severin Kayoko Yasuzawa Imad Abugessaisa Altuna Akalin Ivan V. Antonov Erik Arner Alessandro Bonetti Hidemasa Bono Beatrice Borsari Frank Brombacher Christopher J.F. Cameron Carlo Vittorio Cannistraci Ryan Cardenas Melissa Cardon Howard Chang Josée Dostie Luca Ducoli Alexander Favorov Alexandre Fort Diego Garrido Noa Gil Juliette Gimenez Reto Guler Lusy Handoko Jayson Harshbarger Akira Hasegawa Yuki Hasegawa Kosuke Hashimoto Norihito Hayatsu Peter Heutink Tetsuro Hirose Eddie L. Imada Masayoshi Itoh Bogumil Kaczkowski Aditi Kanhere Emily Kawabata Hideya Kawaji Tsugumi Kawashima S. Thomas Kelly Miki Kojima Naoto Kondo Haruhiko Koseki Tsukasa Kouno Anton Kratz Mariola Kurowska-Stolarska Andrew Tae Jun Kwon Jeffrey Leek Andreas Lennartsson Marina Lizio Fernando López-Redondo Joachim Luginbühl Shiori Maeda Vsevolod J. Makeev Luigi Marchionni Yulia A. Medvedeva Aki Minoda Ferenc Müller Manuel Muñoz-Aguirre Mitsuyoshi Murata Hiromi Nishiyori Kazuhiro R. Nitta Shuhei Noguchi Yukihiko Noro Ramil Nurtdinov Yasushi Okazaki Valerio Orlando Denis Paquette Callum J.C. Parr Owen J.L. Rackham Patrizia Rizzu Diego Fernando Sánchez Martinez Albin Sandelin Pillay Sanjana Colin A.M. Semple Youtaro Shibayama Divya M. Sivaraman Takahiro Suzuki Suzannah C. Szumowski Michihira Tagami Martin S. Taylor Chikashi Terao Malte Thodberg Supat Thongjuea Vidisha Tripathi Igor Ulitsky Roberto Verardo Ilya E. Vorontsov Chinatsu Yamamoto Robert S. Young J. Kenneth Baillie Alistair R.R. Forrest Roderic Guigó Michael M. Hoffman Chung Chau Hon Takeya Kasukawa Sakari Kauppinen Juha Kere Boris Lenhard Claudio Schneider Harukazu Suzuki
  • ... [+107 authors] ...,
  • Ken Yagi
  • Michiel J.L. de Hoon
  • Jay W. Shin
  • Piero Carninci
  • First Published July 27, 2020
Research

P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression" > Three-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression

  • Ferhat Ay
  • Evelien M. Bunnik
  • Nelle Varoquaux
  • Sebastiaan M. Bol
  • Jacques Prudhomme
  • Jean-Philippe Vert
  • William Stafford Noble
  • Karine G. Le Roch
  • First Published March 26, 2014
Letter

Nucleosome landscape and control of transcription in the human malaria parasite

  • Nadia Ponts
  • Elena Y. Harris
  • Jacques Prudhomme
  • Ivan Wick
  • Colleen Eckhardt-Ludka
  • Glenn R. Hicks
  • Gary Hardiman
  • Stefano Lonardi
  • Karine G. Le Roch
  • First Published January 6, 2010
LETTER

Plasmodium falciparum life cycle" > Global analysis of transcript and protein levels across the Plasmodium falciparum life cycle

  • Karine G. Le Roch
  • Jeffrey R. Johnson
  • Laurence Florens
  • Yingyao Zhou
  • Andrey Santrosyan
  • Munira Grainger S. Frank Yan Kim C. Williamson
  • ... [+3 authors] ...,
  • Anthony A. Holder
  • Daniel J. Carucci
  • John R. Yates
  • Elizabeth A. Winzeler
  • First Published November 1, 2004
LETTER

Plasmodium Gene Family Encoding Maurer's Cleft Membrane Proteins: Structural Properties and Expression Profiling" > A Plasmodium Gene Family Encoding Maurer's Cleft Membrane Proteins: Structural Properties and Expression Profiling

  • Tobili Y. Sam-Yellowe
  • Laurence Florens
  • Jeffrey R. Johnson
  • Tongmin Wang
  • Judith A. Drazba
  • Karine G. Le Roch Yingyao Zhou
  • ... [+2 authors] ...,
  • Serge Batalov
  • Daniel J. Carucci
  • Elizabeth A. Winzeler
  • John R. Yates
  • First Published May 12, 2004
Methods

Human Disease Genes and Their Cloned Mouse Orthologs: Exploration of the FANTOM2 cDNA Sequence Data Set

  • Lynn M. Schriml
  • David P. Hill
  • Judith A. Blake
  • Hidemasa Bono
  • Anthony Wynshaw-Boris
  • William J. Pavan
  • ... [+1 authors] ...,
  • Brian Z. Ring
  • Kirk Beisel
  • Mitsutoshi Setou
  • Yasushi Okazaki
  • First Published June 2, 2003
LETTER

Continued Discovery of Transcriptional Units Expressed in Cells of the Mouse Mononuclear Phagocyte Lineage

  • Christine A. Wells
  • Timothy Ravasi
  • Razvan Sultana
  • Ken Yagi
  • Piero Carninci
  • Hidemasa Bono Geoffrey Faulkner
  • ... [+2 authors] ...,
  • Yasushi Okazaki
  • John Quackenbush
  • David A. Hume
  • Paul A. Lyons
  • First Published June 2, 2003
LETTER

The Mouse Secretome: Functional Classification of the Proteins Secreted Into the Extracellular Environment

  • Sean M. Grimmond
  • Kevin C. Miranda
  • Zheng Yuan
  • Melissa J. Davis
  • David A. Hume
  • Ken Yagi Naoko Tominaga
  • ... [+2 authors] ...,
  • Hidemasa Bono
  • Yoshihide Hayashizaki
  • Yasushi Okazaki
  • Rohan D. Teasdale
  • First Published June 2, 2003
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