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Research

Integrating short-read and long-read single-cell RNA sequencing for comprehensive transcriptome profiling in mouse retina

  • Meng Wang
  • Yumei Li
  • Jun Wang
  • Soo Hwan Oh
  • Yexuan Cao
  • Rui Chen
  • First Published March 6, 2025
Method

CodonBERT large language model for mRNA vaccines

  • Sizhen Li
  • Saeed Moayedpour
  • Ruijiang Li
  • Michael Bailey
  • Saleh Riahi
  • Lorenzo Kogler-Anele Milad Miladi Jacob Miner Fabien Pertuy Dinghai Zheng Jun Wang Akshay Balsubramani Khang Tran Minnie Zacharia Monica Wu Xiaobo Gu Ryan Clinton Carla Asquith Joseph Skaleski Lianne Boeglin Sudha Chivukula Anusha Dias Tod Strugnell
  • ... [+18 authors] ...,
  • Fernando Ulloa Montoya
  • Vikram Agarwal
  • Ziv Bar-Joseph
  • Sven Jager
  • First Published July 1, 2024
Method

Predicting unrecognized enhancer-mediated genome topology by an ensemble machine learning model

  • Li Tang
  • Matthew C. Hill
  • Jun Wang
  • Jianxin Wang
  • James F. Martin
  • Min Li
  • First Published November 12, 2020
Resource

Assembly and analysis of 100 full MHC haplotypes from the Danish population

  • Jacob M. Jensen
  • Palle Villesen
  • Rune M. Friborg
  • Thomas Mailund
  • Søren Besenbacher
  • Mikkel H. Schierup Lasse Maretty Jacob Malte Jensen Bent Petersen Jonas Andreas Sibbesen Siyang Liu Palle Villesen Laurits Skov Kirstine Belling Christian Theil Have Jose M.G. Izarzugaza Marie Grosjean Jette Bork-Jensen Jakob Grove Thomas D. Als Shujia Huang Yuqi Chang Ruiqi Xu Weijian Ye Junhua Rao Xiaosen Guo Jihua Sun Hongzhi Cao Chen Ye Johan v Beusekom Thomas Espeseth Esben Flindt Rune M. Friborg Anders E. Halager Stephanie Le Hellard Christina M. Hultman Francesco Lescai Shengting Li Ole Lund Peter Løngren Thomas Mailund Maria Luisa Matey-Hernandez Ole Mors Christian N.S. Pedersen Thomas Sicheritz-Pontén Patrick Sullivan Ali Syed David Westergaard Rachita Yadav Ning Li Xun Xu Torben Hansen Anders Krogh Lars Bolund Thorkild I.A. Sørensen Oluf Pedersen Ramneek Gupta Simon Rasmussen Søren Besenbacher Anders D. Børglum Jun Wang
  • ... [+56 authors] ...,
  • Hans Eiberg
  • Karsten Kristiansen
  • Søren Brunak
  • Mikkel Heide Schierup
  • First Published August 3, 2017
Research

SCRaMbLE generates designed combinatorial stochastic diversity in synthetic chromosomes

  • Yue Shen
  • Giovanni Stracquadanio
  • Yun Wang
  • Kun Yang
  • Leslie A. Mitchell
  • Yaxin Xue Yizhi Cai Tai Chen Jessica S. Dymond Kang Kang Jianhui Gong Xiaofan Zeng Yongfen Zhang Yingrui Li Qiang Feng Xun Xu Jun Wang
  • ... [+12 authors] ...,
  • Jian Wang
  • Huanming Yang
  • Jef D. Boeke
  • Joel S. Bader
  • First Published November 13, 2015
Research

Epigenetic modification and inheritance in sexual reversal of fish

  • Changwei Shao
  • Qiye Li
  • Songlin Chen
  • Pei Zhang
  • Jinmin Lian
  • Qiaomu Hu Bing Sun Lijun Jin Shanshan Liu Zongji Wang Hongmei Zhao Zonghui Jin Zhuo Liang Yangzhen Li
  • ... [+9 authors] ...,
  • Qiumei Zheng
  • Yong Zhang
  • Jun Wang
  • Guojie Zhang
  • First Published February 2, 2014
Resource

Pyrus bretschneideri Rehd.)" > The genome of the pear (Pyrus bretschneideri Rehd.)

  • Jun Wu
  • Zhiwen Wang
  • Zebin Shi
  • Shu Zhang
  • Ray Ming
  • Shilin Zhu M. Awais Khan Shutian Tao Schuyler S. Korban Hao Wang Nancy J. Chen Takeshi Nishio Xun Xu Lin Cong Kaijie Qi Xiaosan Huang Yingtao Wang Xiang Zhao Juyou Wu Cao Deng Caiyun Gou Weili Zhou Hao Yin Gaihua Qin Yuhui Sha Ye Tao Hui Chen Yanan Yang Yue Song Dongliang Zhan Juan Wang Leiting Li Meisong Dai Chao Gu Yuezhi Wang Daihu Shi Xiaowei Wang Huping Zhang Liang Zeng Danman Zheng Chunlei Wang Maoshan Chen Guangbiao Wang Lin Xie Valpuri Sovero Shoufeng Sha Wenjiang Huang Shujun Zhang Mingyue Zhang Jiangmei Sun Linlin Xu Yuan Li Xing Liu Qingsong Li Jiahui Shen Junyi Wang
  • ... [+51 authors] ...,
  • Robert E. Paull
  • Jeffrey L. Bennetzen
  • Jun Wang
  • Shaoling Zhang
  • First Published November 13, 2012
Resource

SOAPindel: Efficient identification of indels from short paired reads

  • Shengting Li
  • Ruiqiang Li
  • Heng Li
  • Jianliang Lu
  • Yingrui Li
  • Lars Bolund
  • Mikkel H. Schierup
  • Jun Wang
  • First Published September 12, 2012
Research

Mycosphaerella graminicola and its wild sister species" > The making of a new pathogen: Insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species

  • Eva H. Stukenbrock
  • Thomas Bataillon
  • Julien Y. Dutheil
  • Troels T. Hansen
  • Ruiqiang Li
  • Marcello Zala
  • Bruce A. McDonald
  • Jun Wang
  • Mikkel H. Schierup
  • First Published October 12, 2011
Research

Acromyrmex echinatior suggests key adaptations to advanced social life and fungus farming" > The genome of the leaf-cutting ant Acromyrmex echinatior suggests key adaptations to advanced social life and fungus farming

  • Sanne Nygaard
  • Guojie Zhang
  • Morten Schiøtt
  • Cai Li
  • Yannick Wurm
  • Haofu Hu Jiajian Zhou Lu Ji Feng Qiu Morten Rasmussen Hailin Pan Frank Hauser
  • ... [+7 authors] ...,
  • Anders Krogh
  • Cornelis J.P. Grimmelikhuijzen
  • Jun Wang
  • Jacobus J. Boomsma
  • First Published June 30, 2011
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