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Resource

Wolffia australiana" > Streamlined spatial and environmental expression signatures characterize the minimalist duckweed Wolffia australiana

  • Tom Denyer
  • Pin-Jou Wu
  • Kelly Colt
  • Bradley W. Abramson
  • Zhili Pang
  • Pavel Solansky Allen Mamerto Tatsuya Nobori
  • ... [+3 authors] ...,
  • Joseph R. Ecker
  • Eric Lam
  • Todd P. Michael
  • Marja C.P. Timmermans
  • First Published July 1, 2024
Research

Wolffia australiana link morphological minimization with gene loss and less growth control" > Genome and time-of-day transcriptome of Wolffia australiana link morphological minimization with gene loss and less growth control

  • Todd P. Michael
  • Evan Ernst
  • Nolan Hartwick
  • Philomena Chu
  • Douglas Bryant
  • Sarah Gilbert Stefan Ortleb Erin L. Baggs K. Sowjanya Sree Klaus J. Appenroth Joerg Fuchs Florian Jupe Justin P. Sandoval Ksenia V. Krasileva Ljudmylla Borisjuk
  • ... [+10 authors] ...,
  • Todd C. Mockler
  • Joseph R. Ecker
  • Robert A. Martienssen
  • Eric Lam
  • First Published December 23, 2020
Research

Genome-wide DNA methylation patterns in LSH mutant reveals de-repression of repeat elements and redundant epigenetic silencing pathways

  • Weishi Yu
  • Carl McIntosh
  • Ryan Lister
  • Iris Zhu
  • Yixing Han
  • Jianke Ren David Landsman Eunice Lee Victorino Briones
  • ... [+4 authors] ...,
  • Minoru Terashima
  • Robert Leighty
  • Joseph R. Ecker
  • Kathrin Muegge
  • First Published August 28, 2014
Research

cis-mediated silencing in somatic cells" > Systematic mapping of occluded genes by cell fusion reveals prevalence and stability of cis-mediated silencing in somatic cells

  • Timothy J. Looney
  • Li Zhang
  • Chih-Hsin Chen
  • Jae Hyun Lee
  • Sheila Chari
  • Frank Fuxiang Mao Mattia Pelizzola Lu Zhang Ryan Lister Samuel W. Baker Croydon J. Fernandes Jedidiah Gaetz Kara M. Foshay Kayla L. Clift Zhenyu Zhang Wei-Qiang Li Eric J. Vallender Ulrich Wagner Jane Yuxia Qin Katelyn J. Michelini Branimir Bugarija Donghyun Park Emmanuel Aryee Thomas Stricker Jie Zhou Kevin P. White Bing Ren
  • ... [+22 authors] ...,
  • Gary P. Schroth
  • Joseph R. Ecker
  • Andy Peng Xiang
  • Bruce T. Lahn
  • First Published December 5, 2013
Research

Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population

  • Robert J. Schmitz
  • Yupeng He
  • Oswaldo Valdés-López
  • Saad M. Khan
  • Trupti Joshi
  • Mark A. Urich Joseph R. Nery
  • ... [+2 authors] ...,
  • Brian Diers
  • Dong Xu
  • Gary Stacey
  • Joseph R. Ecker
  • First Published June 5, 2013
Research

Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer

  • Gary C. Hon
  • R. David Hawkins
  • Otavia L. Caballero
  • Christine Lo
  • Ryan Lister
  • Mattia Pelizzola Armand Valsesia Zhen Ye Samantha Kuan Lee E. Edsall Anamaria Aranha Camargo Brian J. Stevenson Joseph R. Ecker
  • ... [+8 authors] ...,
  • Vineet Bafna
  • Robert L. Strausberg
  • Andrew J. Simpson
  • Bing Ren
  • First Published December 7, 2011
Research

Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration

  • Weisheng Wu
  • Yong Cheng
  • Cheryl A. Keller
  • Jason Ernst
  • Swathi Ashok Kumar
  • Tejaswini Mishra Christapher Morrissey Christine M. Dorman Kuan-Bei Chen Daniela Drautz Belinda Giardine Yoichiro Shibata Lingyun Song Max Pimkin Gregory E. Crawford Terrence S. Furey Manolis Kellis Webb Miller James Taylor Stephan C. Schuster Yu Zhang
  • ... [+16 authors] ...,
  • Francesca Chiaromonte
  • Gerd A. Blobel
  • Mitchell J. Weiss
  • Ross C. Hardison
  • First Published July 27, 2011
Method

Genome-wide identification of conserved regulatory function in diverged sequences

  • Leila Taher
  • David M. McGaughey
  • Samantha Maragh
  • Ivy Aneas
  • Seneca L. Bessling
  • Webb Miller
  • Marcelo A. Nobrega
  • Andrew S. McCallion
  • Ivan Ovcharenko
  • First Published May 31, 2011
Article

Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression

  • Yong Cheng
  • Weisheng Wu
  • Swathi Ashok Kumar
  • Duonan Yu
  • Wulan Deng
  • Tamara Tripic David C. King Kuan-Bei Chen Ying Zhang Daniela Drautz Belinda Giardine Stephan C. Schuster Webb Miller Francesca Chiaromonte
  • ... [+9 authors] ...,
  • Yu Zhang
  • Gerd A. Blobel
  • Mitchell J. Weiss
  • Ross C. Hardison
  • First Published November 3, 2009
Next-Generation DNA Sequencing/Review

Finding the fifth base: Genome-wide sequencing of cytosine methylation

  • Ryan Lister
  • Joseph R. Ecker
  • First Published March 9, 2009
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