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Resource

A limited set of transcriptional programs define major cell types

Alessandra Breschi
Manuel Muñoz-Aguirre
Valentin Wucher
Carrie A. Davis
Diego Garrido-Martín
Sarah Djebali Jesse Gillis Dmitri D. Pervouchine Anna Vlasova Alexander Dobin Chris Zaleski Jorg Drenkow Cassidy Danyko Alexandra Scavelli
... [+9 authors] ...,
Ferran Reverter
Michael P. Snyder
Thomas R. Gingeras
Roderic Guigó

First Published July 29, 2020

Resource

Dynamics of microRNA expression during mouse prenatal development

Sorena Rahmanian
Rabi Murad
Alessandra Breschi
Weihua Zeng
Mark Mackiewicz
Brian Williams Carrie A. Davis Brian Roberts Sarah Meadows Dianna Moore Diane Trout Chris Zaleski Alex Dobin Lei-Hoon Sei Jorg Drenkow Alex Scavelli Thomas R. Gingeras
... [+12 authors] ...,
Barbara J. Wold
Richard M. Myers
Roderic Guigó
Ali Mortazavi

First Published October 23, 2019

ARTICLE

Prominent use of distal 5′ transcription start sites and discovery of a large number of additional exons in ENCODE regions

France Denoeud
Philipp Kapranov
Catherine Ucla
Adam Frankish
Robert Castelo
Jorg Drenkow Julien Lagarde Tyler Alioto Caroline Manzano Jacqueline Chrast Sujit Dike Carine Wyss Charlotte N. Henrichsen Nancy Holroyd Mark C. Dickson Ruth Taylor Zahra Hance Sylvain Foissac Richard M. Myers Jane Rogers Tim Hubbard Jennifer Harrow
... [+17 authors] ...,
Roderic Guigó
Thomas R. Gingeras
Stylianos E. Antonarakis
Alexandre Reymond

First Published June 13, 2007

LETTER

Structured RNAs in the ENCODE selected regions of the human genome

Stefan Washietl
Jakob S. Pedersen
Jan O. Korbel
Claudia Stocsits
Andreas R. Gruber
Jörg Hackermüller Jana Hertel Manja Lindemeyer Kristin Reiche Andrea Tanzer Catherine Ucla Carine Wyss Stylianos E. Antonarakis France Denoeud Julien Lagarde Jorg Drenkow Philipp Kapranov Thomas R. Gingeras Roderic Guigó Michael Snyder
... [+15 authors] ...,
Mark B. Gerstein
Alexandre Reymond
Ivo L. Hofacker
Peter F. Stadler

First Published June 13, 2007

Methods

Examples of the complex architecture of the human transcriptome revealed by RACE and high-density tiling arrays

Philipp Kapranov
Jorg Drenkow
Jill Cheng
Jeffrey Long
Gregg Helt
Sujit Dike
Thomas R. Gingeras

First Published July 5, 2005

ARTICLE

Novel RNAs Identified From an In-Depth Analysis of the Transcriptome of Human Chromosomes 21 and 22

Dione Kampa
Jill Cheng
Philipp Kapranov
Mark Yamanaka
Shane Brubaker
Simon Cawley Jorg Drenkow Antonio Piccolboni
... [+3 authors] ...,
Stefan Bekiranov
Gregg Helt
Hari Tammana
Thomas R. Gingeras

First Published March 1, 2004

LETTER

+ T Cells" > Temporal Gene Regulation During HIV-1 Infection of Human CD4⁺ T Cells

Jacques Corbeil
Dennis Sheeter
Davide Genini
Steffney Rought
Lorenzo Leoni
Pinyi Du Mark Ferguson Daniel R. Masys John B. Welsh J. Lynn Fink Roman Sasik
... [+6 authors] ...,
David Huang
Jorg Drenkow
Douglas D. Richman
Thomas Gingeras

First Published June 12, 2001

LETTER

Mycobacterium tuberculosis " > Comparing Genomes within the Species Mycobacterium tuberculosis

Midori Kato-Maeda
Jeanne T. Rhee
Thomas R. Gingeras
Hugh Salamon
Jorg Drenkow
Nat Smittipat
Peter M. Small

First Published April 1, 2001

METHODS

Detection of Deleted Genomic DNA Using a Semiautomated Computational Analysis of GeneChip Data

Hugh Salamon
Midori Kato-Maeda
Peter M. Small
Jorg Drenkow
Thomas R. Gingeras

First Published November 21, 2000

RESEARCH

Mycobacterium DNA Arrays" > Simultaneous Genotyping and Species Identification Using Hybridization Pattern Recognition Analysis of Generic Mycobacterium DNA Arrays

Thomas R. Gingeras
Ghassan Ghandour
Eugene Wang
Anthony Berno
Peter M. Small
Francis Drobniewski
... [+1 authors] ...,
David Alland
Edward Desmond
Mark Holodniy
Jorg Drenkow

First Published May 1, 1998