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RESOURCE

ALLPATHS: De novo assembly of whole-genome shotgun microreads

  • Jonathan Butler
  • Iain MacCallum
  • Michael Kleber
  • Ilya A. Shlyakhter
  • Matthew K. Belmonte
  • Eric S. Lander
  • Chad Nusbaum
  • David B. Jaffe
  • First Published March 13, 2008
LETTER

Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana" > Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana

  • Takeshi Itoh
  • Tsuyoshi Tanaka
  • Roberto A. Barrero
  • Chisato Yamasaki
  • Yasuyuki Fujii
  • Phillip B. Hilton Baltazar A. Antonio Hideo Aono Rolf Apweiler Richard Bruskiewich Thomas Bureau Frances Burr Antonio Costa de Oliveira Galina Fuks Takuya Habara Georg Haberer Bin Han Erimi Harada Aiko T. Hiraki Hirohiko Hirochika Douglas Hoen Hiroki Hokari Satomi Hosokawa Yue Hsing Hiroshi Ikawa Kazuho Ikeo Tadashi Imanishi Yukiyo Ito Pankaj Jaiswal Masako Kanno Yoshihiro Kawahara Toshiyuki Kawamura Hiroaki Kawashima Jitendra P. Khurana Shoshi Kikuchi Setsuko Komatsu Kanako O. Koyanagi Hiromi Kubooka Damien Lieberherr Yao-Cheng Lin David Lonsdale Takashi Matsumoto Akihiro Matsuya W. Richard McCombie Joachim Messing Akio Miyao Nicola Mulder Yoshiaki Nagamura Jongmin Nam Nobukazu Namiki Hisataka Numa Shin Nurimoto Claire O’Donovan Hajime Ohyanagi Toshihisa Okido Satoshi OOta Naoki Osato Lance E. Palmer Francis Quetier Saurabh Raghuvanshi Naomi Saichi Hiroaki Sakai Yasumichi Sakai Katsumi Sakata Tetsuya Sakurai Fumihiko Sato Yoshiharu Sato Heiko Schoof Motoaki Seki Michie Shibata Yuji Shimizu Kazuo Shinozaki Yuji Shinso Nagendra K. Singh Brian Smith-White Jun-ichi Takeda Motohiko Tanino Tatiana Tatusova Supat Thongjuea Fusano Todokoro Mika Tsugane Akhilesh K. Tyagi Apichart Vanavichit Aihui Wang Rod A. Wing Kaori Yamaguchi Mayu Yamamoto Naoyuki Yamamoto Yeisoo Yu Hao Zhang Qiang Zhao
  • ... [+86 authors] ...,
  • Kenichi Higo
  • Benjamin Burr
  • Takashi Gojobori
  • Takuji Sasaki
  • First Published January 8, 2007
ARTICLE

Mycoplasma mobile" > The Complete Genome and Proteome of Mycoplasma mobile

  • Jacob D. Jaffe
  • Nicole Stange-Thomann
  • Cherylyn Smith
  • David DeCaprio
  • Sheila Fisher
  • Jonathan Butler Sarah Calvo Tim Elkins Michael G. FitzGerald Nabil Hafez Chinnappa D. Kodira John Major Shunguang Wang Jane Wilkinson Robert Nicol
  • ... [+10 authors] ...,
  • Chad Nusbaum
  • Bruce Birren
  • Howard C. Berg
  • George M. Church
  • First Published August 2, 2004
METHODS

The Gene Ontology Annotation (GOA) Project: Implementation of GO in SWISS-PROT, TrEMBL, and InterPro

  • Evelyn Camon
  • Michele Magrane
  • Daniel Barrell
  • David Binns
  • Wolfgang Fleischmann
  • Paul Kersey Nicola Mulder
  • ... [+2 authors] ...,
  • Tom Oinn
  • John Maslen
  • Anthony Cox
  • Rolf Apweiler
  • First Published March 12, 2003
METHODS

Whole-Genome Sequence Assembly for Mammalian Genomes: Arachne 2

  • David B. Jaffe
  • Jonathan Butler
  • Sante Gnerre
  • Evan Mauceli
  • Kerstin Lindblad-Toh
  • Jill P. Mesirov
  • Michael C. Zody
  • Eric S. Lander
  • First Published January 1, 2003
METHODS

ARACHNE: A Whole-Genome Shotgun Assembler

  • Serafim Batzoglou
  • David B. Jaffe
  • Ken Stanley
  • Jonathan Butler
  • Sante Gnerre
  • Evan Mauceli
  • Bonnie Berger
  • Jill P. Mesirov
  • Eric S. Lander
  • First Published January 1, 2002
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