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Research

XIST locus" > Comparative analysis of the primate X-inactivation center region and reconstruction of the ancestral primate XIST locus

  • Julie E. Horvath
  • Christina B. Sheedy
  • Stephanie L. Merrett
  • Abdoulaye Banire Diallo
  • David L. Swofford
  • NISC Comparative Sequencing Program
  • Eric D. Green
  • Huntington F. Willard
  • First Published April 25, 2011
RESOURCE

ALLPATHS: De novo assembly of whole-genome shotgun microreads

  • Jonathan Butler
  • Iain MacCallum
  • Michael Kleber
  • Ilya A. Shlyakhter
  • Matthew K. Belmonte
  • Eric S. Lander
  • Chad Nusbaum
  • David B. Jaffe
  • First Published March 13, 2008
ARTICLE

Mycoplasma mobile" > The Complete Genome and Proteome of Mycoplasma mobile

  • Jacob D. Jaffe
  • Nicole Stange-Thomann
  • Cherylyn Smith
  • David DeCaprio
  • Sheila Fisher
  • Jonathan Butler Sarah Calvo Tim Elkins Michael G. FitzGerald Nabil Hafez Chinnappa D. Kodira John Major Shunguang Wang Jane Wilkinson Robert Nicol
  • ... [+10 authors] ...,
  • Chad Nusbaum
  • Bruce Birren
  • Howard C. Berg
  • George M. Church
  • First Published August 2, 2004
LETTER

Quantitative Estimates of Sequence Divergence for Comparative Analyses of Mammalian Genomes

  • Gregory M. Cooper
  • Michael Brudno
  • NISC Comparative Sequencing Program
  • Eric D. Green
  • Serafim Batzoglou
  • Arend Sidow
  • First Published May 1, 2003
METHODS

LAGAN and Multi-LAGAN: Efficient Tools for Large-Scale Multiple Alignment of Genomic DNA

  • Michael Brudno
  • Chuong B. Do
  • Gregory M. Cooper
  • Michael F. Kim
  • Eugene Davydov
  • NISC Comparative Sequencing Program
  • Eric D. Green
  • Arend Sidow
  • Serafim Batzoglou
  • First Published March 12, 2003
LETTER

Analysis of Primate Genomic Variation Reveals a Repeat-Driven Expansion of the Human Genome

  • Ge Liu
  • NISC Comparative Sequencing Program
  • Shaying Zhao
  • Jeffrey A. Bailey
  • S. Cenk Sahinalp
  • Can Alkan
  • Eray Tuzun
  • Eric D. Green
  • Evan E. Eichler
  • First Published March 1, 2003
METHODS

Whole-Genome Sequence Assembly for Mammalian Genomes: Arachne 2

  • David B. Jaffe
  • Jonathan Butler
  • Sante Gnerre
  • Evan Mauceli
  • Kerstin Lindblad-Toh
  • Jill P. Mesirov
  • Michael C. Zody
  • Eric S. Lander
  • First Published January 1, 2003
LETTER

Pericentromeric Duplications in the Laboratory Mouse

  • James W. Thomas
  • Mary G. Schueler
  • Tyrone J. Summers
  • Robert W. Blakesley
  • Jennifer C. McDowell
  • Pamela J. Thomas Jacquelyn R. Idol Valerie V.B. Maduro Shih-Queen Lee-Lin Jeffrey W. Touchman
  • ... [+5 authors] ...,
  • Gerard G. Bouffard
  • Stephen M. Beckstrom-Sternberg
  • NISC Comparative Sequencing Program
  • Eric D. Green
  • First Published December 30, 2002
METHODS

ARACHNE: A Whole-Genome Shotgun Assembler

  • Serafim Batzoglou
  • David B. Jaffe
  • Ken Stanley
  • Jonathan Butler
  • Sante Gnerre
  • Evan Mauceli
  • Bonnie Berger
  • Jill P. Mesirov
  • Eric S. Lander
  • First Published January 1, 2002
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