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Research

Widespread formation of double-stranded RNAs in testis

  • Andreas Werner
  • James E. Clark
  • Calum Samaranayake
  • John Casement
  • Hany S. Zinad
  • Shaymaa Sadeq
  • ... [+1 authors] ...,
  • Surar Al-Hashimi
  • Martin Smith
  • Noora Kotaja
  • John S. Mattick
  • First Published June 22, 2021
Resource

Improved definition of the mouse transcriptome via targeted RNA sequencing

  • Giovanni Bussotti
  • Tommaso Leonardi
  • Michael B. Clark
  • Tim R. Mercer
  • Joanna Crawford
  • Lorenzo Malquori
  • ... [+1 authors] ...,
  • Cedric Notredame
  • Marcel E. Dinger
  • John S. Mattick
  • Anton J. Enright
  • First Published May 2, 2016
Resource

Genome-wide discovery of human splicing branchpoints

  • Tim R. Mercer
  • Michael B. Clark
  • Stacey B. Andersen
  • Marion E. Brunck
  • Wilfried Haerty
  • Joanna Crawford
  • ... [+1 authors] ...,
  • Ryan J. Taft
  • Lars K. Nielsen
  • Marcel E. Dinger
  • John S. Mattick
  • First Published January 5, 2015
Perspective

Understanding the regulatory and transcriptional complexity of the genome through structure

  • Tim R. Mercer
  • John S. Mattick
  • First Published July 1, 2013
Resource

Triplexator: Detecting nucleic acid triple helices in genomic and transcriptomic data

  • Fabian A. Buske
  • Denis C. Bauer
  • John S. Mattick
  • Timothy L. Bailey
  • First Published May 1, 2012
Research

Genome-wide analysis of long noncoding RNA stability

  • Michael B. Clark
  • Rebecca L. Johnston
  • Mario Inostroza-Ponta
  • Archa H. Fox
  • Ellen Fortini
  • Pablo Moscato
  • Marcel E. Dinger
  • John S. Mattick
  • First Published March 9, 2012
Research

Regulated post-transcriptional RNA cleavage diversifies the eukaryotic transcriptome

  • Tim R. Mercer
  • Marcel E. Dinger
  • Cameron P. Bracken
  • Gabriel Kolle
  • Jan M. Szubert
  • Darren J. Korbie Marjan E. Askarian-Amiri
  • ... [+2 authors] ...,
  • Brooke B. Gardiner
  • Gregory J. Goodall
  • Sean M. Grimmond
  • John S. Mattick
  • First Published November 2, 2010
Methods

Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries

  • Michiel J.L. de Hoon
  • Ryan J. Taft
  • Takehiro Hashimoto
  • Mutsumi Kanamori-Katayama
  • Hideya Kawaji
  • Mitsuoki Kawano Mami Kishima Timo Lassmann Geoffrey J. Faulkner John S. Mattick Carsten O. Daub
  • ... [+6 authors] ...,
  • Piero Carninci
  • Jun Kawai
  • Harukazu Suzuki
  • Yoshihide Hayashizaki
  • First Published January 5, 2010
Article

MEN ε/β nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles" > MEN ε/β nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles

  • Hongjae Sunwoo
  • Marcel E. Dinger
  • Jeremy E. Wilusz
  • Paulo P. Amaral
  • John S. Mattick
  • David L. Spector
  • First Published December 22, 2008
LETTER

Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation

  • Marcel E. Dinger
  • Paulo P. Amaral
  • Tim R. Mercer
  • Ken C. Pang
  • Stephen J. Bruce
  • Brooke B. Gardiner Marjan E. Askarian-Amiri Kelin Ru Giulia Soldà Cas Simons Susan M. Sunkin
  • ... [+6 authors] ...,
  • Mark L. Crowe
  • Sean M. Grimmond
  • Andrew C. Perkins
  • John S. Mattick
  • First Published June 18, 2008
PERSPECTIVE

Raising the estimate of functional human sequences

  • Michael Pheasant
  • John S. Mattick
  • First Published August 9, 2007
LETTER

Transposon-free regions in mammalian genomes

  • Cas Simons
  • Michael Pheasant
  • Igor V. Makunin
  • John S. Mattick
  • First Published December 19, 2005
ARTICLE

Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome

  • Timothy Ravasi
  • Harukazu Suzuki
  • Ken C. Pang
  • Shintaro Katayama
  • Masaaki Furuno
  • Rie Okunishi Shiro Fukuda Kelin Ru Martin C. Frith M. Milena Gongora
  • ... [+5 authors] ...,
  • Sean M. Grimmond
  • David A. Hume
  • Yoshihide Hayashizaki
  • John S. Mattick
  • First Published December 12, 2005
LETTER

homothorax mRNA splicing" > Ultraconserved elements in insect genomes: A highly conserved intronic sequence implicated in the control of homothorax mRNA splicing

  • Evgeny A. Glazov
  • Michael Pheasant
  • Elizabeth A. McGraw
  • Gill Bejerano
  • John S. Mattick
  • First Published May 17, 2005
ARTICLE

Archaea Methanogenium frigidum and Methanococcoides burtonii" > Mechanisms of Thermal Adaptation Revealed From the Genomes of the Antarctic Archaea Methanogenium frigidum and Methanococcoides burtonii

  • Neil F.W. Saunders
  • Torsten Thomas
  • Paul M.G. Curmi
  • John S. Mattick
  • Elizabeth Kuczek
  • Rob Slade John Davis Peter D. Franzmann David Boone Karl Rusterholtz Robert Feldman Chris Gates Shellie Bench Kevin Sowers Kristen Kadner Andrea Aerts Paramvir Dehal Chris Detter Tijana Glavina Susan Lucas Paul Richardson
  • ... [+16 authors] ...,
  • Frank Larimer
  • Loren Hauser
  • Miriam Land
  • Ricardo Cavicchioli
  • First Published June 12, 2003
LETTER

Identification and Analysis of Chromodomain-Containing Proteins Encoded in the Mouse Transcriptome

  • Khairina Tajul-Arifin
  • Rohan Teasdale
  • Timothy Ravasi
  • David A. Hume
  • John S. Mattick
  • First Published June 2, 2003
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