Search | Genome Research

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Method

Spatial Cellular Networks from omics data with SpaCeNet

Stefan Schrod
Niklas Lück
Robert Lohmayer
Stefan Solbrig
Dennis Völkl
Tina Wipfler Katherine H. Shutta Marouen Ben Guebila Andreas Schäfer Tim Beißbarth
... [+5 authors] ...,
Helena U. Zacharias
Peter J. Oefner
John Quackenbush
Michael Altenbuchinger

First Published September 4, 2024

Method

Bayesian inference of sample-specific coexpression networks

Enakshi Saha
Viola Fanfani
Panagiotis Mandros
Marouen Ben Guebila
Jonas Fischer
Katherine H. Shutta
Dawn L. DeMeo
Camila M. Lopes-Ramos
John Quackenbush

First Published August 12, 2024

Method

Predicting genotype-specific gene regulatory networks

Deborah Weighill
Marouen Ben Guebila
Kimberly Glass
John Quackenbush
John Platig

First Published February 22, 2022

Research

Genomic signatures of germline gene expression

Graham McVicker
Phil Green

First Published August 4, 2010

Methods

C. elegans gene annotations" > Use of shotgun proteomics for the identification, confirmation, and correction of C. elegans gene annotations

Gennifer E. Merrihew
Colleen Davis
Brent Ewing
Gary Williams
Lukas Käll
Barbara E. Frewen
... [+1 authors] ...,
William Stafford Noble
Phil Green
James H. Thomas
Michael J. MacCoss

First Published July 24, 2008

Methods

Targeted discovery of novel human exons by comparative genomics

Adam Siepel
Mark Diekhans
Broňa Brejová
Laura Langton
Michael Stevens
Charles L.G. Comstock Colleen Davis Brent Ewing Shelly Oommen Christopher Lau Hung-Chun Yu Jianfeng Li Bruce A. Roe Phil Green
... [+9 authors] ...,
Daniela S. Gerhard
Gary Temple
David Haussler
Michael R. Brent

First Published November 7, 2007

COMMENTARY

2× genomes—Does depth matter?

Phil Green

First Published November 1, 2007

LETTER

Differing patterns of selection in alternative and constitutive splice sites

Kavita Garg
Phil Green

First Published June 7, 2007

LETTER

Characterization and predictive discovery of evolutionarily conserved mammalian alternative promoters

Daehyun Baek
Colleen Davis
Brent Ewing
David Gordon
Phil Green

First Published January 8, 2007

LETTER

Uneven chromosome contraction and expansion in the maize genome

Rémy Bruggmann
Arvind K. Bharti
Heidrun Gundlach
Jinsheng Lai
Sarah Young
Ana C. Pontaroli Fusheng Wei Georg Haberer Galina Fuks Chunguang Du Christina Raymond Matt C. Estep Renyi Liu Jeffrey L. Bennetzen Agnes P. Chan Pablo D. Rabinowicz John Quackenbush W. Brad Barbazuk Rod A. Wing Bruce Birren
... [+15 authors] ...,
Chad Nusbaum
Steve Rounsley
Klaus F.X. Mayer
Joachim Messing

First Published August 10, 2006

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