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Method

Shotgun proteomics aids discovery of novel protein-coding genes, alternative splicing, and “resurrected” pseudogenes in the mouse genome

  • Markus Brosch
  • Gary I. Saunders
  • Adam Frankish
  • Mark O. Collins
  • Lu Yu
  • James Wright Ruth Verstraten
  • ... [+2 authors] ...,
  • David J. Adams
  • Jennifer Harrow
  • Jyoti S. Choudhary
  • Tim Hubbard
  • First Published April 1, 2011
Resource

The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes

  • Kim D. Pruitt
  • Jennifer Harrow
  • Rachel A. Harte
  • Craig Wallin
  • Mark Diekhans
  • Donna R. Maglott Steve Searle Catherine M. Farrell Jane E. Loveland Barbara J. Ruef Elizabeth Hart Marie-Marthe Suner Melissa J. Landrum Bronwen Aken Sarah Ayling Robert Baertsch Julio Fernandez-Banet Joshua L. Cherry Val Curwen Michael DiCuccio Manolis Kellis Jennifer Lee Michael F. Lin Michael Schuster Andrew Shkeda Clara Amid Garth Brown Oksana Dukhanina Adam Frankish Jennifer Hart Bonnie L. Maidak Jonathan Mudge Michael R. Murphy Terence Murphy Jeena Rajan Bhanu Rajput Lillian D. Riddick Catherine Snow Charles Steward David Webb Janet A. Weber Laurens Wilming Wenyu Wu Ewan Birney David Haussler
  • ... [+40 authors] ...,
  • Tim Hubbard
  • James Ostell
  • Richard Durbin
  • David Lipman
  • First Published June 4, 2009
Resource

Automated identification of conserved synteny after whole-genome duplication

  • Julian M. Catchen
  • John S. Conery
  • John H. Postlethwait
  • First Published May 22, 2009
ARTICLE

Prominent use of distal 5′ transcription start sites and discovery of a large number of additional exons in ENCODE regions

  • France Denoeud
  • Philipp Kapranov
  • Catherine Ucla
  • Adam Frankish
  • Robert Castelo
  • Jorg Drenkow Julien Lagarde Tyler Alioto Caroline Manzano Jacqueline Chrast Sujit Dike Carine Wyss Charlotte N. Henrichsen Nancy Holroyd Mark C. Dickson Ruth Taylor Zahra Hance Sylvain Foissac Richard M. Myers Jane Rogers Tim Hubbard Jennifer Harrow
  • ... [+17 authors] ...,
  • Roderic Guigó
  • Thomas R. Gingeras
  • Stylianos E. Antonarakis
  • Alexandre Reymond
  • First Published June 13, 2007
RESOURCE

The zebrafish gene map defines ancestral vertebrate chromosomes

  • Ian G. Woods
  • Catherine Wilson
  • Brian Friedlander
  • Patricia Chang
  • Daengnoy K. Reyes
  • Rebecca Nix
  • ... [+1 authors] ...,
  • Peter D. Kelly
  • Felicia Chu
  • John H. Postlethwait
  • William S. Talbot
  • First Published August 18, 2005
ENSEMBL Special

An Overview of Ensembl

  • Ewan Birney
  • T. Daniel Andrews
  • Paul Bevan
  • Mario Caccamo
  • Yuan Chen
  • Laura Clarke Guy Coates James Cuff Val Curwen Tim Cutts Thomas Down Eduardo Eyras Xose M. Fernandez-Suarez Paul Gane Brian Gibbins James Gilbert Martin Hammond Hans-Rudolf Hotz Vivek Iyer Kerstin Jekosch Andreas Kahari Arek Kasprzyk Damian Keefe Stephen Keenan Heikki Lehvaslaiho Graham McVicker Craig Melsopp Patrick Meidl Emmanuel Mongin Roger Pettett Simon Potter Glenn Proctor Mark Rae Steve Searle Guy Slater Damian Smedley James Smith Will Spooner Arne Stabenau James Stalker Roy Storey Abel Ureta-Vidal K. Cara Woodwark Graham Cameron
  • ... [+39 authors] ...,
  • Richard Durbin
  • Anthony Cox
  • Tim Hubbard
  • Michele Clamp
  • First Published April 12, 2004
ARTICLE

Hox Clusters and Genome Evolution in Ray-Fin Fish" > Developmental Roles of Pufferfish Hox Clusters and Genome Evolution in Ray-Fin Fish

  • Angel Amores
  • Tohru Suzuki
  • Yi-Lin Yan
  • Jordan Pomeroy
  • Amy Singer
  • Chris Amemiya
  • John H. Postlethwait
  • First Published January 5, 2004
LETTER

Danio rerio " > The Repertoire of Na,K-ATPase α and β Subunit Genes Expressed in the Zebrafish, Danio rerio

  • S. Johannes R. Rajarao
  • Victor A. Canfield
  • Manzoor-Ali P.K. Mohideen
  • Yi-Lin Yan
  • John H. Postlethwait
  • Keith C. Cheng
  • Robert Levenson
  • First Published July 1, 2001
LETTER

A Comparative Map of the Zebrafish Genome

  • Ian G. Woods
  • Peter D. Kelly
  • Felicia Chu
  • Phuong Ngo-Hazelett
  • Yi-Lin Yan
  • Hui Huang
  • John H. Postlethwait
  • William S. Talbot
  • First Published December 1, 2000
ARTICLE

Zebrafish Comparative Genomics and the Origins of Vertebrate Chromosomes

  • John H. Postlethwait
  • Ian G. Woods
  • Phuong Ngo-Hazelett
  • Yi-Lin Yan
  • Peter D. Kelly
  • Felicia Chu
  • Hui Huang
  • Alicia Hill-Force
  • William S. Talbot
  • First Published December 1, 2000
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