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Resource

Single-cell strand sequencing of a macaque genome reveals multiple nested inversions and breakpoint reuse during primate evolution

  • Flavia Angela Maria Maggiolini
  • Ashley D. Sanders
  • Colin James Shew
  • Arvis Sulovari
  • Yafei Mao
  • Marta Puig Claudia Rita Catacchio Maria Dellino Donato Palmisano Ludovica Mercuri Miriana Bitonto David Porubský Mario Cáceres Evan E. Eichler
  • ... [+9 authors] ...,
  • Mario Ventura
  • Megan Y. Dennis
  • Jan O. Korbel
  • Francesca Antonacci
  • First Published October 22, 2020
Method

Determining the impact of uncharacterized inversions in the human genome by droplet digital PCR

  • Marta Puig
  • Jon Lerga-Jaso
  • Carla Giner-Delgado
  • Sarai Pacheco
  • David Izquierdo
  • Alejandra Delprat
  • ... [+1 authors] ...,
  • Magdalena Gayà-Vidal
  • Jack F. Regan
  • George Karlin-Neumann
  • Mario Cáceres
  • First Published May 18, 2020
Research

Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line

  • Maria Nattestad
  • Sara Goodwin
  • Karen Ng
  • Timour Baslan
  • Fritz J. Sedlazeck
  • Philipp Rescheneder Tyler Garvin Han Fang James Gurtowski Elizabeth Hutton Elizabeth Tseng Chen-Shan Chin Timothy Beck Yogi Sundaravadanam Melissa Kramer Eric Antoniou
  • ... [+11 authors] ...,
  • John D. McPherson
  • James Hicks
  • W. Richard McCombie
  • Michael C. Schatz
  • First Published June 28, 2018
LETTER

Massively parallel bisulphite pyrosequencing reveals the molecular complexity of breast cancer-associated cytosine-methylation patterns obtained from tissue and serum DNA

  • Yulia Korshunova
  • Rebecca K. Maloney
  • Nathan Lakey
  • Robert W. Citek
  • Blaire Bacher
  • Arief Budiman Jared M. Ordway
  • ... [+2 authors] ...,
  • W. Richard McCombie
  • Jorge Leon
  • Jeffrey A. Jeddeloh
  • John D. McPherson
  • First Published November 21, 2007
LETTER

Punctuated duplication seeding events during the evolution of human chromosome 2p11

  • Julie E. Horvath
  • Cassandra L. Gulden
  • Rhea U. Vallente
  • Marla Y. Eichler
  • Mario Ventura
  • John D. McPherson Tina A. Graves
  • ... [+2 authors] ...,
  • Richard K. Wilson
  • Stuart Schwartz
  • Mariano Rocchi
  • Evan E. Eichler
  • First Published June 17, 2005
Methods

Histoplasma capsulatum Genome" > Fosmid-Based Physical Mapping of the Histoplasma capsulatum Genome

  • Vincent Magrini
  • Wesley C. Warren
  • John Wallis
  • William E. Goldman
  • Jian Xu
  • Elaine R. Mardis
  • John D. McPherson
  • First Published August 2, 2004
RESOURCE

Integrated and Sequence-Ordered BAC- and YAC-Based Physical Maps for the Rat Genome

  • Martin Krzywinski
  • John Wallis
  • Claudia Gösele
  • Ian Bosdet
  • Readman Chiu
  • Tina Graves Oliver Hummel Dan Layman Carrie Mathewson Natasja Wye Baoli Zhu Derek Albracht Jennifer Asano Sarah Barber Mabel Brown-John Susanna Chan Steve Chand Alison Cloutier Jonathon Davito Chris Fjell Tony Gaige Detlev Ganten Noreen Girn Kurtis Guggenheimer Heinz Himmelbauer Thomas Kreitler Stephen Leach Darlene Lee Hans Lehrach Michael Mayo Kelly Mead Teika Olson Pawan Pandoh Anna-Liisa Prabhu Heesun Shin Simone Tänzer Jason Thompson Miranda Tsai Jason Walker George Yang Mandeep Sekhon LaDeana Hillier Heike Zimdahl Andre Marziali Kazutoyo Osoegawa Shaying Zhao Asim Siddiqui Pieter J. de Jong Wes Warren Elaine Mardis John D. McPherson Richard Wilson
  • ... [+47 authors] ...,
  • Norbert Hübner
  • Steven Jones
  • Marco Marra
  • Jacqueline Schein
  • First Published April 1, 2004
METHODS

Software for Automated Analysis of DNA Fingerprinting Gels

  • Daniel R. Fuhrmann
  • Martin I. Krzywinski
  • Readman Chiu
  • Parvaneh Saeedi
  • Jacqueline E. Schein
  • Ian E. Bosdet Asif Chinwalla LaDeana W. Hillier
  • ... [+3 authors] ...,
  • Robert H. Waterston
  • John D. McPherson
  • Steven J.M. Jones
  • Marco A. Marra
  • First Published May 1, 2003
LETTER

Drosophila buzzatii Genome Induced by Transposon Insertions" > Molecular Characterization of Two Natural Hotspots in the Drosophila buzzatii Genome Induced by Transposon Insertions

  • Mario Cáceres
  • Marta Puig
  • Alfredo Ruiz
  • First Published July 12, 2001
LETTER

The Syntenic Relationship of the Zebrafish and Human Genomes

  • W. Bradley Barbazuk
  • Ian Korf
  • Candy Kadavi
  • Joshua Heyen
  • Stephanie Tate
  • Edmund Wun
  • Joseph A. Bedell
  • John D. McPherson
  • Stephen L. Johnson
  • First Published September 1, 2000
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