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Research

Yeast genetic interaction screen of human genes associated with amyotrophic lateral sclerosis: identification of MAP2K5 kinase as a potential drug target

  • Myungjin Jo
  • Ah Young Chung
  • Nozomu Yachie
  • Minchul Seo
  • Hyejin Jeon
  • Youngpyo Nam Yeojin Seo Eunmi Kim Quan Zhong
  • ... [+4 authors] ...,
  • Marc Vidal
  • Hae Chul Park
  • Frederick P. Roth
  • Kyoungho Suk
  • First Published June 8, 2017
Method

An extended set of yeast-based functional assays accurately identifies human disease mutations

  • Song Sun
  • Fan Yang
  • Guihong Tan
  • Michael Costanzo
  • Rose Oughtred
  • Jodi Hirschman Chandra L. Theesfeld Pritpal Bansal Nidhi Sahni Song Yi Analyn Yu Tanya Tyagi Cathy Tie David E. Hill Marc Vidal
  • ... [+10 authors] ...,
  • Brenda J. Andrews
  • Charles Boone
  • Kara Dolinski
  • Frederick P. Roth
  • First Published March 14, 2016
Research

Dynamics of chromatin accessibility and long-range interactions in response to glucocorticoid pulsing

  • Diana A. Stavreva
  • Antoine Coulon
  • Songjoon Baek
  • Myong-Hee Sung
  • Sam John
  • Lenka Stixova Martina Tesikova Ofir Hakim Tina Miranda
  • ... [+4 authors] ...,
  • Mary Hawkins
  • John A. Stamatoyannopoulos
  • Carson C. Chow
  • Gordon L. Hager
  • First Published February 12, 2015
Research

Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions

  • Nathan C. Sheffield
  • Robert E. Thurman
  • Lingyun Song
  • Alexias Safi
  • John A. Stamatoyannopoulos
  • Boris Lenhard
  • Gregory E. Crawford
  • Terrence S. Furey
  • First Published March 12, 2013
Resource

Dynamic DNA methylation across diverse human cell lines and tissues

  • Katherine E. Varley
  • Jason Gertz
  • Kevin M. Bowling
  • Stephanie L. Parker
  • Timothy E. Reddy
  • Florencia Pauli-Behn Marie K. Cross Brian A. Williams John A. Stamatoyannopoulos
  • ... [+4 authors] ...,
  • Gregory E. Crawford
  • Devin M. Absher
  • Barbara J. Wold
  • Richard M. Myers
  • First Published January 16, 2013
Research

Widespread plasticity in CTCF occupancy linked to DNA methylation

  • Hao Wang
  • Matthew T. Maurano
  • Hongzhu Qu
  • Katherine E. Varley
  • Jason Gertz
  • Florencia Pauli Kristen Lee Theresa Canfield Molly Weaver Richard Sandstrom
  • ... [+5 authors] ...,
  • Robert E. Thurman
  • Rajinder Kaul
  • Richard M. Myers
  • John A. Stamatoyannopoulos
  • First Published September 5, 2012
Perspective

What does our genome encode?

  • John A. Stamatoyannopoulos
  • First Published September 5, 2012
Resource

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

  • Stephen G. Landt
  • Georgi K. Marinov
  • Anshul Kundaje
  • Pouya Kheradpour
  • Florencia Pauli
  • Serafim Batzoglou Bradley E. Bernstein Peter Bickel James B. Brown Philip Cayting Yiwen Chen Gilberto DeSalvo Charles Epstein Katherine I. Fisher-Aylor Ghia Euskirchen Mark Gerstein Jason Gertz Alexander J. Hartemink Michael M. Hoffman Vishwanath R. Iyer Youngsook L. Jung Subhradip Karmakar Manolis Kellis Peter V. Kharchenko Qunhua Li Tao Liu X. Shirley Liu Lijia Ma Aleksandar Milosavljevic Richard M. Myers Peter J. Park Michael J. Pazin Marc D. Perry Debasish Raha Timothy E. Reddy Joel Rozowsky Noam Shoresh Arend Sidow Matthew Slattery John A. Stamatoyannopoulos Michael Y. Tolstorukov Kevin P. White Simon Xi
  • ... [+38 authors] ...,
  • Peggy J. Farnham
  • Jason D. Lieb
  • Barbara J. Wold
  • Michael Snyder
  • First Published September 5, 2012
Research

Personal and population genomics of human regulatory variation

  • Benjamin Vernot
  • Andrew B. Stergachis
  • Matthew T. Maurano
  • Jeff Vierstra
  • Shane Neph
  • Robert E. Thurman
  • John A. Stamatoyannopoulos
  • Joshua M. Akey
  • First Published September 5, 2012
Research

Late-replicating heterochromatin is characterized by decreased cytosine methylation in the human genome

  • Masako Suzuki
  • Mayumi Oda
  • María-Paz Ramos
  • Marién Pascual
  • Kevin Lau
  • Edyta Stasiek Frederick Agyiri Reid F. Thompson Jacob L. Glass Qiang Jing Richard Sandstrom Melissa J. Fazzari
  • ... [+7 authors] ...,
  • R. Scott Hansen
  • John A. Stamatoyannopoulos
  • Andrew S. McLellan
  • John M. Greally
  • First Published September 28, 2011
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