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Positive selection in noncoding genomic regions of vocal learning birds is associated with genes implicated in vocal learning and speech functions in humans

James A. Cahill
Joel Armstrong
Alden Deran
Carolyn J. Khoury
Benedict Paten
David Haussler
Erich D. Jarvis

First Published October 19, 2021

Predicting transfer RNA gene activity from sequence and genome context

Bryan P. Thornlow
Joel Armstrong
Andrew D. Holmes
Jonathan M. Howard
Russell B. Corbett-Detig
Todd M. Lowe

First Published December 19, 2019

Chromosome assembly of large and complex genomes using multiple references

Mikhail Kolmogorov
Joel Armstrong
Brian J. Raney
Ian Streeter
Matthew Dunn
Fengtang Yang Duncan Odom Paul Flicek
... [+3 authors] ...,
Thomas M. Keane
David Thybert
Benedict Paten
Son Pham

First Published October 19, 2018

Comparative Annotation Toolkit (CAT)—simultaneous clade and personal genome annotation

Ian T. Fiddes
Joel Armstrong
Mark Diekhans
Stefanie Nachtweide
Zev N. Kronenberg
Jason G. Underwood David Gordon Dent Earl Thomas Keane
... [+4 authors] ...,
Evan E. Eichler
David Haussler
Mario Stanke
Benedict Paten

First Published June 8, 2018

Evaluating recovery potential of the northern white rhinoceros from cryopreserved somatic cells

Tate Tunstall
Richard Kock
Jiri Vahala
Mark Diekhans
Ian Fiddes
Joel Armstrong
Benedict Paten
Oliver A. Ryder
Cynthia C. Steiner

First Published May 24, 2018

Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling

Edward S. Rice
Satomi Kohno
John St. John
Son Pham
Jonathan Howard
Liana F. Lareau Brendan L. O'Connell Glenn Hickey Joel Armstrong Alden Deran Ian Fiddes Roy N. Platt Cathy Gresham Fiona McCarthy Colin Kern David Haan Tan Phan Carl Schmidt Jeremy R. Sanford
... [+14 authors] ...,
David A. Ray
Benedict Paten
Louis J. Guillette
Richard E. Green

First Published January 30, 2017