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Research

Diverse tumorigenic consequences of human papillomavirus integration in primary oropharyngeal cancers

David E. Symer
Keiko Akagi
Heather M. Geiger
Yang Song
Gaiyun Li
Anne-Katrin Emde Weihong Xiao Bo Jiang André Corvelo Nora C. Toussaint Jingfeng Li Amit Agrawal Enver Ozer Adel K. El-Naggar Zoe Du Jitesh B. Shewale Birgit Stache-Crain
... [+12 authors] ...,
Mark Zucker
Nicolas Robine
Kevin R. Coombes
Maura L. Gillison

First Published December 13, 2021

Research

Human papillomavirus and the landscape of secondary genetic alterations in oral cancers

Maura L. Gillison
Keiko Akagi
Weihong Xiao
Bo Jiang
Robert K.L. Pickard
Jingfeng Li Benjamin J. Swanson Amit D. Agrawal Mark Zucker Birgit Stache-Crain Anne-Katrin Emde
... [+6 authors] ...,
Heather M. Geiger
Nicolas Robine
Kevin R. Coombes
David E. Symer

First Published December 18, 2018

Research

Genome-wide analysis of HPV integration in human cancers reveals recurrent, focal genomic instability

Keiko Akagi
Jingfeng Li
Tatevik R. Broutian
Hesed Padilla-Nash
Weihong Xiao
Bo Jiang James W. Rocco Theodoros N. Teknos Bhavna Kumar Danny Wangsa
... [+5 authors] ...,
Dandan He
Thomas Ried
David E. Symer
Maura L. Gillison

First Published November 7, 2013

Research

Mouse endogenous retroviruses can trigger premature transcriptional termination at a distance

Jingfeng Li
Keiko Akagi
Yongjun Hu
Anna L. Trivett
Christopher J.W. Hlynialuk
Deborah A. Swing Natalia Volfovsky Tamara C. Morgan
... [+3 authors] ...,
Yelena Golubeva
Robert M. Stephens
David E. Smith
David E. Symer

First Published February 23, 2012

Research

Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration

Weisheng Wu
Yong Cheng
Cheryl A. Keller
Jason Ernst
Swathi Ashok Kumar
Tejaswini Mishra Christapher Morrissey Christine M. Dorman Kuan-Bei Chen Daniela Drautz Belinda Giardine Yoichiro Shibata Lingyun Song Max Pimkin Gregory E. Crawford Terrence S. Furey Manolis Kellis Webb Miller James Taylor Stephan C. Schuster Yu Zhang
... [+16 authors] ...,
Francesca Chiaromonte
Gerd A. Blobel
Mitchell J. Weiss
Ross C. Hardison

First Published July 27, 2011

Method

Genome-wide identification of conserved regulatory function in diverged sequences

Leila Taher
David M. McGaughey
Samantha Maragh
Ivy Aneas
Seneca L. Bessling
Webb Miller
Marcelo A. Nobrega
Andrew S. McCallion
Ivan Ovcharenko

First Published May 31, 2011

Article

Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression

Yong Cheng
Weisheng Wu
Swathi Ashok Kumar
Duonan Yu
Wulan Deng
Tamara Tripic David C. King Kuan-Bei Chen Ying Zhang Daniela Drautz Belinda Giardine Stephan C. Schuster Webb Miller Francesca Chiaromonte
... [+9 authors] ...,
Yu Zhang
Gerd A. Blobel
Mitchell J. Weiss
Ross C. Hardison

First Published November 3, 2009

LETTER

Thylacinus cynocephalus)" > The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus)

Webb Miller
Daniela I. Drautz
Jan E. Janecka
Arthur M. Lesk
Aakrosh Ratan
Lynn P. Tomsho Mike Packard Yeting Zhang Lindsay R. McClellan Ji Qi Fangqing Zhao M. Thomas P. Gilbert Love Dalén Juan Luis Arsuaga Per G.P. Ericson Daniel H. Huson
... [+11 authors] ...,
Kristofer M. Helgen
William J. Murphy
Anders Götherström
Stephan C. Schuster

First Published January 12, 2009

LETTER

Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif

Yong Cheng
David C. King
Louis C. Dore
Xinmin Zhang
Yuepin Zhou
Ying Zhang Christine Dorman Demesew Abebe Swathi A. Kumar Francesca Chiaromonte
... [+5 authors] ...,
Webb Miller
Roland D. Green
Mitchell J. Weiss
Ross C. Hardison

First Published September 25, 2008

LETTER

Extensive variation between inbred mouse strains due to endogenous L1 retrotransposition

Keiko Akagi
Jingfeng Li
Robert M. Stephens
Natalia Volfovsky
David E. Symer

First Published April 1, 2008

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