Search | Genome Research

CL_GR_GenSeq_728x90

Your search for returned 26 results

Research

Diverse tumorigenic consequences of human papillomavirus integration in primary oropharyngeal cancers

David E. Symer
Keiko Akagi
Heather M. Geiger
Yang Song
Gaiyun Li
Anne-Katrin Emde Weihong Xiao Bo Jiang André Corvelo Nora C. Toussaint Jingfeng Li Amit Agrawal Enver Ozer Adel K. El-Naggar Zoe Du Jitesh B. Shewale Birgit Stache-Crain
... [+12 authors] ...,
Mark Zucker
Nicolas Robine
Kevin R. Coombes
Maura L. Gillison

First Published December 13, 2021

Research

Human papillomavirus and the landscape of secondary genetic alterations in oral cancers

Maura L. Gillison
Keiko Akagi
Weihong Xiao
Bo Jiang
Robert K.L. Pickard
Jingfeng Li Benjamin J. Swanson Amit D. Agrawal Mark Zucker Birgit Stache-Crain Anne-Katrin Emde
... [+6 authors] ...,
Heather M. Geiger
Nicolas Robine
Kevin R. Coombes
David E. Symer

First Published December 18, 2018

Method

Read clouds uncover variation in complex regions of the human genome

Alex Bishara
Yuling Liu
Ziming Weng
Dorna Kashef-Haghighi
Daniel E. Newburger
Robert West
Arend Sidow
Serafim Batzoglou

First Published August 18, 2015

Method

Parente2: a fast and accurate method for detecting identity by descent

Jesse M. Rodriguez
Sivan Bercovici
Lin Huang
Roy Frostig
Serafim Batzoglou

First Published October 1, 2014

Research

Genome-wide analysis of HPV integration in human cancers reveals recurrent, focal genomic instability

Keiko Akagi
Jingfeng Li
Tatevik R. Broutian
Hesed Padilla-Nash
Weihong Xiao
Bo Jiang James W. Rocco Theodoros N. Teknos Bhavna Kumar Danny Wangsa
... [+5 authors] ...,
Dandan He
Thomas Ried
David E. Symer
Maura L. Gillison

First Published November 7, 2013

Research

Genome evolution during progression to breast cancer

Daniel E. Newburger
Dorna Kashef-Haghighi
Ziming Weng
Raheleh Salari
Robert T. Sweeney
Alayne L. Brunner Shirley X. Zhu Xiangqian Guo Sushama Varma
... [+4 authors] ...,
Megan L. Troxell
Robert B. West
Serafim Batzoglou
Arend Sidow

First Published April 8, 2013

Method

Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements

Anshul Kundaje
Sofia Kyriazopoulou-Panagiotopoulou
Max Libbrecht
Cheryl L. Smith
Debasish Raha
Elliott E. Winters
... [+1 authors] ...,
Steven M. Johnson
Michael Snyder
Serafim Batzoglou
Arend Sidow

First Published September 5, 2012

Resource

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

Stephen G. Landt
Georgi K. Marinov
Anshul Kundaje
Pouya Kheradpour
Florencia Pauli
Serafim Batzoglou Bradley E. Bernstein Peter Bickel James B. Brown Philip Cayting Yiwen Chen Gilberto DeSalvo Charles Epstein Katherine I. Fisher-Aylor Ghia Euskirchen Mark Gerstein Jason Gertz Alexander J. Hartemink Michael M. Hoffman Vishwanath R. Iyer Youngsook L. Jung Subhradip Karmakar Manolis Kellis Peter V. Kharchenko Qunhua Li Tao Liu X. Shirley Liu Lijia Ma Aleksandar Milosavljevic Richard M. Myers Peter J. Park Michael J. Pazin Marc D. Perry Debasish Raha Timothy E. Reddy Joel Rozowsky Noam Shoresh Arend Sidow Matthew Slattery John A. Stamatoyannopoulos Michael Y. Tolstorukov Kevin P. White Simon Xi
... [+38 authors] ...,
Peggy J. Farnham
Jason D. Lieb
Barbara J. Wold
Michael Snyder

First Published September 5, 2012

Method

Linking disease associations with regulatory information in the human genome

Marc A. Schaub
Alan P. Boyle
Anshul Kundaje
Serafim Batzoglou
Michael Snyder

First Published September 5, 2012

Research

Mouse endogenous retroviruses can trigger premature transcriptional termination at a distance

Jingfeng Li
Keiko Akagi
Yongjun Hu
Anna L. Trivett
Christopher J.W. Hlynialuk
Deborah A. Swing Natalia Volfovsky Tamara C. Morgan
... [+3 authors] ...,
Yelena Golubeva
Robert M. Stephens
David E. Smith
David E. Symer

First Published February 23, 2012

1
2
3