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Research

LTR7-PLAAT4 as a potential oncogene and therapeutic target in pancreatic adenocarcinoma" > Transcriptomic landscape of transposable elements reveals LTR7-PLAAT4 as a potential oncogene and therapeutic target in pancreatic adenocarcinoma

  • Meilong Shi
  • Chuanqi Teng
  • Shan Zhang
  • Xiaobo He
  • Lingyun Xu
  • Fengxian Han Rongqi Wen Ganjun Yu Jingwen Liu Yang Feng
  • ... [+5 authors] ...,
  • Yanfeng Wu
  • Yan Ren
  • Gang Jin
  • Jing Li
  • First Published January 8, 2026
Resource

Haplotype-resolved 3D chromatin architecture of the hybrid pig

  • Yu Lin
  • Jing Li
  • Yiren Gu
  • Long Jin
  • Jingyi Bai
  • Jiaman Zhang Yujie Wang Pengliang Liu Keren Long Mengnan He Diyan Li Can Liu Ziyin Han Yu Zhang Xiaokai Li Bo Zeng Lu Lu Fanli Kong Ying Sun Yongliang Fan Xun Wang Tao Wang An'an Jiang Jideng Ma Linyuan Shen Li Zhu Yanzhi Jiang Guoqing Tang Xiaolan Fan Qingyou Liu Hua Li Jinyong Wang Li Chen
  • ... [+28 authors] ...,
  • Liangpeng Ge
  • Xuewei Li
  • Qianzi Tang
  • Mingzhou Li
  • First Published March 13, 2024
Resource

A new emu genome illuminates the evolution of genome configuration and nuclear architecture of avian chromosomes

  • Jing Liu
  • Zongji Wang
  • Jing Li
  • Luohao Xu
  • Jiaqi Liu
  • Shaohong Feng Chunxue Guo Shengchan Chen Zhanjun Ren Jinpeng Rao Kai Wei
  • ... [+6 authors] ...,
  • Yuezhou Chen
  • Erich D. Jarvis
  • Guojie Zhang
  • Qi Zhou
  • First Published January 6, 2021
Research

Enhancer transcription reveals subtype-specific gene expression programs controlling breast cancer pathogenesis

  • Hector L. Franco
  • Anusha Nagari
  • Venkat S. Malladi
  • Wenqian Li
  • Yuanxin Xi
  • Dana Richardson Kendra L. Allton Kaori Tanaka Jing Li Shino Murakami Khandan Keyomarsi Mark T. Bedford Xiaobing Shi
  • ... [+8 authors] ...,
  • Wei Li
  • Michelle C. Barton
  • Sharon Y.R. Dent
  • W. Lee Kraus
  • First Published December 22, 2017
Method

Read clouds uncover variation in complex regions of the human genome

  • Alex Bishara
  • Yuling Liu
  • Ziming Weng
  • Dorna Kashef-Haghighi
  • Daniel E. Newburger
  • Robert West
  • Arend Sidow
  • Serafim Batzoglou
  • First Published August 18, 2015
Method

Parente2: a fast and accurate method for detecting identity by descent

  • Jesse M. Rodriguez
  • Sivan Bercovici
  • Lin Huang
  • Roy Frostig
  • Serafim Batzoglou
  • First Published October 1, 2014
Research

Genome evolution during progression to breast cancer

  • Daniel E. Newburger
  • Dorna Kashef-Haghighi
  • Ziming Weng
  • Raheleh Salari
  • Robert T. Sweeney
  • Alayne L. Brunner Shirley X. Zhu Xiangqian Guo Sushama Varma
  • ... [+4 authors] ...,
  • Megan L. Troxell
  • Robert B. West
  • Serafim Batzoglou
  • Arend Sidow
  • First Published April 8, 2013
Method

Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements

  • Anshul Kundaje
  • Sofia Kyriazopoulou-Panagiotopoulou
  • Max Libbrecht
  • Cheryl L. Smith
  • Debasish Raha
  • Elliott E. Winters
  • ... [+1 authors] ...,
  • Steven M. Johnson
  • Michael Snyder
  • Serafim Batzoglou
  • Arend Sidow
  • First Published September 5, 2012
Resource

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

  • Stephen G. Landt
  • Georgi K. Marinov
  • Anshul Kundaje
  • Pouya Kheradpour
  • Florencia Pauli
  • Serafim Batzoglou Bradley E. Bernstein Peter Bickel James B. Brown Philip Cayting Yiwen Chen Gilberto DeSalvo Charles Epstein Katherine I. Fisher-Aylor Ghia Euskirchen Mark Gerstein Jason Gertz Alexander J. Hartemink Michael M. Hoffman Vishwanath R. Iyer Youngsook L. Jung Subhradip Karmakar Manolis Kellis Peter V. Kharchenko Qunhua Li Tao Liu X. Shirley Liu Lijia Ma Aleksandar Milosavljevic Richard M. Myers Peter J. Park Michael J. Pazin Marc D. Perry Debasish Raha Timothy E. Reddy Joel Rozowsky Noam Shoresh Arend Sidow Matthew Slattery John A. Stamatoyannopoulos Michael Y. Tolstorukov Kevin P. White Simon Xi
  • ... [+38 authors] ...,
  • Peggy J. Farnham
  • Jason D. Lieb
  • Barbara J. Wold
  • Michael Snyder
  • First Published September 5, 2012
Method

Linking disease associations with regulatory information in the human genome

  • Marc A. Schaub
  • Alan P. Boyle
  • Anshul Kundaje
  • Serafim Batzoglou
  • Michael Snyder
  • First Published September 5, 2012
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