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Method

Multisource omic alignment and biological feature discovery with Performer encoder and triplet networks

  • Zihuan Du
  • Xiaoyu Zhang
  • Qiang Zhang
  • Jing Li
  • Zhijie Cao
  • Ge Gao
  • Tao Lin
  • Dong Wang
  • Shuai Gao
  • First Published July 22, 2026
Research

LTR7-PLAAT4 as a potential oncogene and therapeutic target in pancreatic adenocarcinoma" > Transcriptomic landscape of transposable elements reveals LTR7-PLAAT4 as a potential oncogene and therapeutic target in pancreatic adenocarcinoma

  • Meilong Shi
  • Chuanqi Teng
  • Shan Zhang
  • Xiaobo He
  • Lingyun Xu
  • Fengxian Han Rongqi Wen Ganjun Yu Jingwen Liu Yang Feng
  • ... [+5 authors] ...,
  • Yanfeng Wu
  • Yan Ren
  • Gang Jin
  • Jing Li
  • First Published January 8, 2026
Resource

Haplotype-resolved 3D chromatin architecture of the hybrid pig

  • Yu Lin
  • Jing Li
  • Yiren Gu
  • Long Jin
  • Jingyi Bai
  • Jiaman Zhang Yujie Wang Pengliang Liu Keren Long Mengnan He Diyan Li Can Liu Ziyin Han Yu Zhang Xiaokai Li Bo Zeng Lu Lu Fanli Kong Ying Sun Yongliang Fan Xun Wang Tao Wang An'an Jiang Jideng Ma Linyuan Shen Li Zhu Yanzhi Jiang Guoqing Tang Xiaolan Fan Qingyou Liu Hua Li Jinyong Wang Li Chen
  • ... [+28 authors] ...,
  • Liangpeng Ge
  • Xuewei Li
  • Qianzi Tang
  • Mingzhou Li
  • First Published March 13, 2024
Resource

A new emu genome illuminates the evolution of genome configuration and nuclear architecture of avian chromosomes

  • Jing Liu
  • Zongji Wang
  • Jing Li
  • Luohao Xu
  • Jiaqi Liu
  • Shaohong Feng Chunxue Guo Shengchan Chen Zhanjun Ren Jinpeng Rao Kai Wei
  • ... [+6 authors] ...,
  • Yuezhou Chen
  • Erich D. Jarvis
  • Guojie Zhang
  • Qi Zhou
  • First Published January 6, 2021
Research

Enhancer transcription reveals subtype-specific gene expression programs controlling breast cancer pathogenesis

  • Hector L. Franco
  • Anusha Nagari
  • Venkat S. Malladi
  • Wenqian Li
  • Yuanxin Xi
  • Dana Richardson Kendra L. Allton Kaori Tanaka Jing Li Shino Murakami Khandan Keyomarsi Mark T. Bedford Xiaobing Shi
  • ... [+8 authors] ...,
  • Wei Li
  • Michelle C. Barton
  • Sharon Y.R. Dent
  • W. Lee Kraus
  • First Published December 22, 2017
Research

Yeast genetic interaction screen of human genes associated with amyotrophic lateral sclerosis: identification of MAP2K5 kinase as a potential drug target

  • Myungjin Jo
  • Ah Young Chung
  • Nozomu Yachie
  • Minchul Seo
  • Hyejin Jeon
  • Youngpyo Nam Yeojin Seo Eunmi Kim Quan Zhong
  • ... [+4 authors] ...,
  • Marc Vidal
  • Hae Chul Park
  • Frederick P. Roth
  • Kyoungho Suk
  • First Published June 8, 2017
Method

An extended set of yeast-based functional assays accurately identifies human disease mutations

  • Song Sun
  • Fan Yang
  • Guihong Tan
  • Michael Costanzo
  • Rose Oughtred
  • Jodi Hirschman Chandra L. Theesfeld Pritpal Bansal Nidhi Sahni Song Yi Analyn Yu Tanya Tyagi Cathy Tie David E. Hill Marc Vidal
  • ... [+10 authors] ...,
  • Brenda J. Andrews
  • Charles Boone
  • Kara Dolinski
  • Frederick P. Roth
  • First Published March 14, 2016
Research

Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration

  • Weisheng Wu
  • Yong Cheng
  • Cheryl A. Keller
  • Jason Ernst
  • Swathi Ashok Kumar
  • Tejaswini Mishra Christapher Morrissey Christine M. Dorman Kuan-Bei Chen Daniela Drautz Belinda Giardine Yoichiro Shibata Lingyun Song Max Pimkin Gregory E. Crawford Terrence S. Furey Manolis Kellis Webb Miller James Taylor Stephan C. Schuster Yu Zhang
  • ... [+16 authors] ...,
  • Francesca Chiaromonte
  • Gerd A. Blobel
  • Mitchell J. Weiss
  • Ross C. Hardison
  • First Published July 27, 2011
Method

Genome-wide identification of conserved regulatory function in diverged sequences

  • Leila Taher
  • David M. McGaughey
  • Samantha Maragh
  • Ivy Aneas
  • Seneca L. Bessling
  • Webb Miller
  • Marcelo A. Nobrega
  • Andrew S. McCallion
  • Ivan Ovcharenko
  • First Published May 31, 2011
Article

Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression

  • Yong Cheng
  • Weisheng Wu
  • Swathi Ashok Kumar
  • Duonan Yu
  • Wulan Deng
  • Tamara Tripic David C. King Kuan-Bei Chen Ying Zhang Daniela Drautz Belinda Giardine Stephan C. Schuster Webb Miller Francesca Chiaromonte
  • ... [+9 authors] ...,
  • Yu Zhang
  • Gerd A. Blobel
  • Mitchell J. Weiss
  • Ross C. Hardison
  • First Published November 3, 2009
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