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Resource

An integrative TAD catalog in lymphoblastoid cell lines discloses the functional impact of deletions and insertions in human genomes

  • Chong Li
  • Marc Jan Bonder
  • Sabriya Syed
  • Matthew Jensen
  • Mark B. Gerstein
  • Michael C. Zody Mark J.P. Chaisson Michael E. Talkowski Tobias Marschall
  • ... [+4 authors] ...,
  • Jan O. Korbel
  • Evan E. Eichler
  • Charles Lee
  • Xinghua Shi
  • First Published December 5, 2024
Resource

High-coverage nanopore sequencing of samples from the 1000 Genomes Project to build a comprehensive catalog of human genetic variation

  • Jonas A. Gustafson
  • Sophia B. Gibson
  • Nikhita Damaraju
  • Miranda P.G. Zalusky
  • Kendra Hoekzema
  • David Twesigomwe Lei Yang Anthony A. Snead Phillip A. Richmond Wouter De Coster Nathan D. Olson Andrea Guarracino Qiuhui Li Angela L. Miller Joy Goffena Zachary B. Anderson Sophie H.R. Storz Sydney A. Ward Maisha Sinha Claudia Gonzaga-Jauregui Wayne E. Clarke Anna O. Basile André Corvelo Catherine Reeves Adrienne Helland Rajeeva Lochan Musunuri Mahler Revsine Karynne E. Patterson Cate R. Paschal Christina Zakarian Sara Goodwin Tanner D. Jensen Esther Robb William Richard McCombie Fritz J. Sedlazeck Justin M. Zook Stephen B. Montgomery Erik Garrison Mikhail Kolmogorov Michael C. Schatz Richard N. McLaughlin Harriet Dashnow Michael C. Zody
  • ... [+38 authors] ...,
  • Matt Loose
  • Miten Jain
  • Evan E. Eichler
  • Danny E. Miller
  • First Published October 2, 2024
Method

Whole-genome bisulfite sequencing with improved accuracy and cost

  • Masako Suzuki
  • Will Liao
  • Frank Wos
  • Andrew D. Johnston
  • Justin DeGrazia
  • Jennifer Ishii
  • ... [+1 authors] ...,
  • Toby Bloom
  • Michael C. Zody
  • Soren Germer
  • John M. Greally
  • First Published August 9, 2018
Method

taxMaps: comprehensive and highly accurate taxonomic classification of short-read data in reasonable time

  • André Corvelo
  • Wayne E. Clarke
  • Nicolas Robine
  • Michael C. Zody
  • First Published March 27, 2018
LETTER

Why do human diversity levels vary at a megabase scale?

  • Ines Hellmann
  • Kay Prüfer
  • Hongkai Ji
  • Michael C. Zody
  • Svante Pääbo
  • Susan E. Ptak
  • First Published September 1, 2005
METHODS

Whole-Genome Sequence Assembly for Mammalian Genomes: Arachne 2

  • David B. Jaffe
  • Jonathan Butler
  • Sante Gnerre
  • Evan Mauceli
  • Kerstin Lindblad-Toh
  • Jill P. Mesirov
  • Michael C. Zody
  • Eric S. Lander
  • First Published January 1, 2003
METHODS

Escherichia coli O157:H7 Genome" > Shotgun Optical Maps of the Whole Escherichia coli O157:H7 Genome

  • Alex Lim
  • Eileen T. Dimalanta
  • Konstantinos D. Potamousis
  • Galex Yen
  • Jennifer Apodoca
  • Chunhong Tao Jieyi Lin Rong Qi John Skiadas Arvind Ramanathan Nicole T. Perna Guy Plunkett Valerie Burland Bob Mau Jeremiah Hackett
  • ... [+10 authors] ...,
  • Frederick R. Blattner
  • Thomas S. Anantharaman
  • Bhubaneswar Mishra
  • David C. Schwartz
  • First Published August 16, 2001
METHODS

Plasmodium falciparum Chromosome 2" > Optical Mapping of Plasmodium falciparum Chromosome 2

  • Junping Jing
  • Zhongwu Lai
  • Christopher Aston
  • Jieyi Lin
  • Daniel J. Carucci
  • Malcolm J. Gardner Bud Mishra Thomas S. Anantharaman Hervé Tettelin
  • ... [+4 authors] ...,
  • Leda M. Cummings
  • Stephen L. Hoffman
  • J. Craig Venter
  • David C. Schwartz
  • First Published February 1, 1999
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