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Research

CRX classifies clinical variants and reveals biochemical properties of the transcriptional effector domain" > Mutational scanning of CRX classifies clinical variants and reveals biochemical properties of the transcriptional effector domain

  • James L. Shepherdson
  • David M. Granas
  • Jie Li
  • Zara Shariff
  • Stephen P. Plassmeyer
  • Alex S. Holehouse
  • Michael A. White
  • Barak A. Cohen
  • First Published September 25, 2024
Research

Plasma cell-free RNA characteristics in COVID-19 patients

  • Yanqun Wang
  • Jie Li
  • Lu Zhang
  • Hai-Xi Sun
  • Zhaoyong Zhang
  • Jinjin Xu Yonghao Xu Yu Lin Airu Zhu Yuxue Luo Haibo Zhou Yan Wu Shanwen Lin Yuzhe Sun Fei Xiao Ruiying Chen Liyan Wen Wei Chen Fang Li Rijing Ou Yanjun Zhang Tingyou Kuo Yuming Li Lingguo Li Jing Sun Kun Sun Zhen Zhuang Haorong Lu Zhao Chen Guoqiang Mai Jianfen Zhuo Puyi Qian Jiayu Chen Huanming Yang Jian Wang Xun Xu Nanshan Zhong
  • ... [+32 authors] ...,
  • Jingxian Zhao
  • Junhua Li
  • Jincun Zhao
  • Xin Jin
  • First Published January 21, 2022
Research

Low-frequency somatic copy number alterations in normal human lymphocytes revealed by large-scale single-cell whole-genome profiling

  • Lu Liu
  • He Chen
  • Cheng Sun
  • Jianyun Zhang
  • Juncheng Wang
  • Meijie Du Jie Li Lin Di Jie Shen Shuang Geng Yuhong Pang Yingying Luo Chen Wu
  • ... [+8 authors] ...,
  • Yusi Fu
  • Zhe Zheng
  • Jianbin Wang
  • Yanyi Huang
  • First Published December 28, 2021
Research

PTPRZ1-MET fusion transcript in secondary glioblastomas" > RNA-seq of 272 gliomas revealed a novel, recurrent PTPRZ1-MET fusion transcript in secondary glioblastomas

  • Zhao-Shi Bao
  • Hui-Min Chen
  • Ming-Yu Yang
  • Chuan-Bao Zhang
  • Kai Yu
  • Wan-Lu Ye Bo-Qiang Hu Wei Yan Wei Zhang Johnny Akers Valya Ramakrishnan Jie Li Bob Carter Yan-Wei Liu Hui-Min Hu Zheng Wang Ming-Yang Li Kun Yao Xiao-Guang Qiu Chun-Sheng Kang Yong-Ping You Xiao-Long Fan Wei Sonya Song
  • ... [+18 authors] ...,
  • Rui-Qiang Li
  • Xiao-Dong Su
  • Clark C. Chen
  • Tao Jiang
  • First Published August 18, 2014
Research

Whole-exome sequencing combined with functional genomics reveals novel candidate driver cancer genes in endometrial cancer

  • Han Liang
  • Lydia W.T. Cheung
  • Jie Li
  • Zhenlin Ju
  • Shuangxing Yu
  • Katherine Stemke-Hale Turgut Dogruluk Yiling Lu Xiuping Liu Chao Gu Wei Guo Steven E. Scherer Hannah Carter Shannon N. Westin Mary D. Dyer Roeland G.W. Verhaak Fan Zhang Rachel Karchin Chang-Gong Liu Karen H. Lu
  • ... [+15 authors] ...,
  • Russell R. Broaddus
  • Kenneth L. Scott
  • Bryan T. Hennessy
  • Gordon B. Mills
  • First Published October 1, 2012
Resource

HaploMerger: Reconstructing allelic relationships for polymorphic diploid genome assemblies

  • Shengfeng Huang
  • Zelin Chen
  • Guangrui Huang
  • Ting Yu
  • Ping Yang
  • Jie Li
  • ... [+1 authors] ...,
  • Yonggui Fu
  • Shaochun Yuan
  • Shangwu Chen
  • Anlong Xu
  • First Published May 3, 2012
Research

Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration

  • Weisheng Wu
  • Yong Cheng
  • Cheryl A. Keller
  • Jason Ernst
  • Swathi Ashok Kumar
  • Tejaswini Mishra Christapher Morrissey Christine M. Dorman Kuan-Bei Chen Daniela Drautz Belinda Giardine Yoichiro Shibata Lingyun Song Max Pimkin Gregory E. Crawford Terrence S. Furey Manolis Kellis Webb Miller James Taylor Stephan C. Schuster Yu Zhang
  • ... [+16 authors] ...,
  • Francesca Chiaromonte
  • Gerd A. Blobel
  • Mitchell J. Weiss
  • Ross C. Hardison
  • First Published July 27, 2011
Method

Genome-wide identification of conserved regulatory function in diverged sequences

  • Leila Taher
  • David M. McGaughey
  • Samantha Maragh
  • Ivy Aneas
  • Seneca L. Bessling
  • Webb Miller
  • Marcelo A. Nobrega
  • Andrew S. McCallion
  • Ivan Ovcharenko
  • First Published May 31, 2011
Method

Differential genome-wide profiling of tandem 3′ UTRs among human breast cancer and normal cells by high-throughput sequencing

  • Yonggui Fu
  • Yu Sun
  • Yuxin Li
  • Jie Li
  • Xingqiang Rao
  • Chong Chen
  • Anlong Xu
  • First Published April 7, 2011
Article

Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression

  • Yong Cheng
  • Weisheng Wu
  • Swathi Ashok Kumar
  • Duonan Yu
  • Wulan Deng
  • Tamara Tripic David C. King Kuan-Bei Chen Ying Zhang Daniela Drautz Belinda Giardine Stephan C. Schuster Webb Miller Francesca Chiaromonte
  • ... [+9 authors] ...,
  • Yu Zhang
  • Gerd A. Blobel
  • Mitchell J. Weiss
  • Ross C. Hardison
  • First Published November 3, 2009
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