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Resource

An integrative TAD catalog in lymphoblastoid cell lines discloses the functional impact of deletions and insertions in human genomes

  • Chong Li
  • Marc Jan Bonder
  • Sabriya Syed
  • Matthew Jensen
  • Mark B. Gerstein
  • Michael C. Zody Mark J.P. Chaisson Michael E. Talkowski Tobias Marschall
  • ... [+4 authors] ...,
  • Jan O. Korbel
  • Evan E. Eichler
  • Charles Lee
  • Xinghua Shi
  • First Published December 5, 2024
Research

CRX classifies clinical variants and reveals biochemical properties of the transcriptional effector domain" > Mutational scanning of CRX classifies clinical variants and reveals biochemical properties of the transcriptional effector domain

  • James L. Shepherdson
  • David M. Granas
  • Jie Li
  • Zara Shariff
  • Stephen P. Plassmeyer
  • Alex S. Holehouse
  • Michael A. White
  • Barak A. Cohen
  • First Published September 25, 2024
Method

Assessing and mitigating privacy risks of sparse, noisy genotypes by local alignment to haplotype databases

  • Prashant S. Emani
  • Maya N. Geradi
  • Gamze Gürsoy
  • Monica R. Grasty
  • Andrew Miranker
  • Mark B. Gerstein
  • First Published December 14, 2023
Research

Plasma cell-free RNA characteristics in COVID-19 patients

  • Yanqun Wang
  • Jie Li
  • Lu Zhang
  • Hai-Xi Sun
  • Zhaoyong Zhang
  • Jinjin Xu Yonghao Xu Yu Lin Airu Zhu Yuxue Luo Haibo Zhou Yan Wu Shanwen Lin Yuzhe Sun Fei Xiao Ruiying Chen Liyan Wen Wei Chen Fang Li Rijing Ou Yanjun Zhang Tingyou Kuo Yuming Li Lingguo Li Jing Sun Kun Sun Zhen Zhuang Haorong Lu Zhao Chen Guoqiang Mai Jianfen Zhuo Puyi Qian Jiayu Chen Huanming Yang Jian Wang Xun Xu Nanshan Zhong
  • ... [+32 authors] ...,
  • Jingxian Zhao
  • Junhua Li
  • Jincun Zhao
  • Xin Jin
  • First Published January 21, 2022
Research

Low-frequency somatic copy number alterations in normal human lymphocytes revealed by large-scale single-cell whole-genome profiling

  • Lu Liu
  • He Chen
  • Cheng Sun
  • Jianyun Zhang
  • Juncheng Wang
  • Meijie Du Jie Li Lin Di Jie Shen Shuang Geng Yuhong Pang Yingying Luo Chen Wu
  • ... [+8 authors] ...,
  • Yusi Fu
  • Zhe Zheng
  • Jianbin Wang
  • Yanyi Huang
  • First Published December 28, 2021
Research

Dynamic RNA–protein interactions underlie the zebrafish maternal-to-zygotic transition

  • Vladimir Despic
  • Mario Dejung
  • Mengting Gu
  • Jayanth Krishnan
  • Jing Zhang
  • Lydia Herzel
  • ... [+1 authors] ...,
  • Korinna Straube
  • Mark B. Gerstein
  • Falk Butter
  • Karla M. Neugebauer
  • First Published April 5, 2017
Research

Pangolin genomes and the evolution of mammalian scales and immunity

  • Siew Woh Choo
  • Mike Rayko
  • Tze King Tan
  • Ranjeev Hari
  • Aleksey Komissarov
  • Wei Yee Wee Andrey A. Yurchenko Sergey Kliver Gaik Tamazian Agostinho Antunes Richard K. Wilson Wesley C. Warren Klaus-Peter Koepfli Patrick Minx Ksenia Krasheninnikova Antoinette Kotze Desire L. Dalton Elaine Vermaak Ian C. Paterson Pavel Dobrynin Frankie Thomas Sitam Jeffrine J. Rovie-Ryan Warren E. Johnson Aini Mohamed Yusoff Shu-Jin Luo Kayal Vizi Karuppannan Gang Fang Deyou Zheng
  • ... [+23 authors] ...,
  • Mark B. Gerstein
  • Leonard Lipovich
  • Stephen J. O'Brien
  • Guat Jah Wong
  • First Published August 10, 2016
Research

PTPRZ1-MET fusion transcript in secondary glioblastomas" > RNA-seq of 272 gliomas revealed a novel, recurrent PTPRZ1-MET fusion transcript in secondary glioblastomas

  • Zhao-Shi Bao
  • Hui-Min Chen
  • Ming-Yu Yang
  • Chuan-Bao Zhang
  • Kai Yu
  • Wan-Lu Ye Bo-Qiang Hu Wei Yan Wei Zhang Johnny Akers Valya Ramakrishnan Jie Li Bob Carter Yan-Wei Liu Hui-Min Hu Zheng Wang Ming-Yang Li Kun Yao Xiao-Guang Qiu Chun-Sheng Kang Yong-Ping You Xiao-Long Fan Wei Sonya Song
  • ... [+18 authors] ...,
  • Rui-Qiang Li
  • Xiao-Dong Su
  • Clark C. Chen
  • Tao Jiang
  • First Published August 18, 2014
Research

Whole-exome sequencing combined with functional genomics reveals novel candidate driver cancer genes in endometrial cancer

  • Han Liang
  • Lydia W.T. Cheung
  • Jie Li
  • Zhenlin Ju
  • Shuangxing Yu
  • Katherine Stemke-Hale Turgut Dogruluk Yiling Lu Xiuping Liu Chao Gu Wei Guo Steven E. Scherer Hannah Carter Shannon N. Westin Mary D. Dyer Roeland G.W. Verhaak Fan Zhang Rachel Karchin Chang-Gong Liu Karen H. Lu
  • ... [+15 authors] ...,
  • Russell R. Broaddus
  • Kenneth L. Scott
  • Bryan T. Hennessy
  • Gordon B. Mills
  • First Published October 1, 2012
Resource

HaploMerger: Reconstructing allelic relationships for polymorphic diploid genome assemblies

  • Shengfeng Huang
  • Zelin Chen
  • Guangrui Huang
  • Ting Yu
  • Ping Yang
  • Jie Li
  • ... [+1 authors] ...,
  • Yonggui Fu
  • Shaochun Yuan
  • Shangwu Chen
  • Anlong Xu
  • First Published May 3, 2012
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