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Method

Unified integration of spatial transcriptomics across platforms with LLOKI

  • First Published November 13, 2025
Research

Integrating short-read and long-read single-cell RNA sequencing for comprehensive transcriptome profiling in mouse retina

  • First Published March 6, 2025
Resource

An integrative TAD catalog in lymphoblastoid cell lines discloses the functional impact of deletions and insertions in human genomes

  • First Published December 5, 2024
Editorial

Innovations in computational biology: RECOMB 2024 Special Issue

  • First Published October 11, 2024
Method

CodonBERT large language model for mRNA vaccines

  • First Published July 1, 2024
Method

Assessing and mitigating privacy risks of sparse, noisy genotypes by local alignment to haplotype databases

  • First Published December 14, 2023
Method

TSA-seq reveals a largely conserved genome organization relative to nuclear speckles with small position changes tightly correlated with gene expression changes

  • First Published December 18, 2020
Method

Predicting unrecognized enhancer-mediated genome topology by an ensemble machine learning model

  • First Published November 12, 2020
Method

MOCHI enables discovery of heterogeneous interactome modules in 3D nucleome

  • First Published January 6, 2020
Research

Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks

  • First Published February 13, 2019
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