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In memoriam

Jim Watson (1928–2025): a genomics visionary

  • Aravinda Chakravarti
  • Evan E. Eichler
  • Anne C. Ferguson-Smith
  • Richard A. Gibbs
  • Eric D. Green
  • John R. Inglis
  • Kateryna D. Makova
  • Richard M. Myers
  • Hillary E. Sussman
  • First Published July 23, 2026
Method

Unified integration of spatial transcriptomics across platforms with LLOKI

  • Ellie Haber
  • Ajinkya Deshpande
  • Jian Ma
  • Spencer Krieger
  • First Published November 13, 2025
Editorial

Innovations in computational biology: RECOMB 2024 Special Issue

  • Jian Ma
  • Bonnie Berger
  • First Published October 11, 2024
In memoriam

C. Thomas Caskey (1938–2022)

  • Richard A. Gibbs
  • Aravinda Chakravarti
  • Evan E. Eichler
  • Eric D. Green
  • Richard M. Myers
  • Anne C. Ferguson-Smith
  • Kateryna D. Makova
  • Hillary E. Sussman
  • First Published February 17, 2022
In memoriam

Deborah A. Nickerson (1954 –2021)

  • Aravinda Chakravarti
  • Evan E. Eichler
  • Richard A. Gibbs
  • Eric D. Green
  • Richard M. Myers
  • Hillary E. Sussman
  • First Published January 24, 2022
Method

TSA-seq reveals a largely conserved genome organization relative to nuclear speckles with small position changes tightly correlated with gene expression changes

  • Liguo Zhang
  • Yang Zhang
  • Yu Chen
  • Omid Gholamalamdari
  • Yuchuan Wang
  • Jian Ma
  • Andrew S. Belmont
  • First Published December 18, 2020
Research

Bos taurus reveals pervasiveness of X–Y arms races in mammalian lineages" > Sequence analysis in Bos taurus reveals pervasiveness of X–Y arms races in mammalian lineages

  • Jennifer F. Hughes
  • Helen Skaletsky
  • Tatyana Pyntikova
  • Natalia Koutseva
  • Terje Raudsepp
  • Laura G. Brown Daniel W. Bellott Ting-Jan Cho Shannon Dugan-Rocha Ziad Khan Colin Kremitzki Catrina Fronick Tina A. Graves-Lindsay Lucinda Fulton Wesley C. Warren Richard K. Wilson Elaine Owens James E. Womack William J. Murphy Donna M. Muzny
  • ... [+15 authors] ...,
  • Kim C. Worley
  • Bhanu P. Chowdhary
  • Richard A. Gibbs
  • David C. Page
  • First Published November 18, 2020
Method

MOCHI enables discovery of heterogeneous interactome modules in 3D nucleome

  • Dechao Tian
  • Ruochi Zhang
  • Yang Zhang
  • Xiaopeng Zhu
  • Jian Ma
  • First Published January 6, 2020
Research

Enterococcus faecium hospital-adapted lineages in municipal wastewater treatment plants indicates widespread distribution and release into the environment" > Detection of vancomycin-resistant Enterococcus faecium hospital-adapted lineages in municipal wastewater treatment plants indicates widespread distribution and release into the environment

  • Theodore Gouliouris
  • Kathy E. Raven
  • Danesh Moradigaravand
  • Catherine Ludden
  • Francesc Coll
  • Beth Blane Plamena Naydenova Carolyne Horner Nicholas M. Brown
  • ... [+4 authors] ...,
  • Jukka Corander
  • Direk Limmathurotsakul
  • Julian Parkhill
  • Sharon J. Peacock
  • First Published March 21, 2019
Research

Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks

  • Marta Farré
  • Jaebum Kim
  • Anastasia A. Proskuryakova
  • Yang Zhang
  • Anastasia I. Kulemzina
  • Qiye Li Yang Zhou Yingqi Xiong Jennifer L. Johnson Polina L. Perelman Warren E. Johnson Wesley C. Warren Anna V. Kukekova Guojie Zhang Stephen J. O'Brien Oliver A. Ryder
  • ... [+11 authors] ...,
  • Alexander S. Graphodatsky
  • Jian Ma
  • Harris A. Lewin
  • Denis M. Larkin
  • First Published February 13, 2019
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