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Research

A quantitative framework for characterizing the evolutionary history of mammalian gene expression

Jenny Chen
Ross Swofford
Jeremy Johnson
Beryl B. Cummings
Noga Rogel
Kerstin Lindblad-Toh
Wilfried Haerty
Federica di Palma
Aviv Regev

First Published December 14, 2018

Research

ERAP2 transcripts under balancing selection" > Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of ERAP2 transcripts under balancing selection

Chun Jimmie Ye
Jenny Chen
Alexandra-Chloé Villani
Rachel E. Gate
Meena Subramaniam
Tushar Bhangale Mark N. Lee Towfique Raj Raktima Raychowdhury Weibo Li Noga Rogel Sean Simmons Selina H. Imboywa Portia I. Chipendo Cristin McCabe Michelle H. Lee Irene Y. Frohlich Barbara E. Stranger
... [+13 authors] ...,
Philip L. De Jager
Aviv Regev
Tim Behrens
Nir Hacohen

First Published November 16, 2018

Research

Yeast genetic interaction screen of human genes associated with amyotrophic lateral sclerosis: identification of MAP2K5 kinase as a potential drug target

Myungjin Jo
Ah Young Chung
Nozomu Yachie
Minchul Seo
Hyejin Jeon
Youngpyo Nam Yeojin Seo Eunmi Kim Quan Zhong
... [+4 authors] ...,
Marc Vidal
Hae Chul Park
Frederick P. Roth
Kyoungho Suk

First Published June 8, 2017

Method

An extended set of yeast-based functional assays accurately identifies human disease mutations

Song Sun
Fan Yang
Guihong Tan
Michael Costanzo
Rose Oughtred
Jodi Hirschman Chandra L. Theesfeld Pritpal Bansal Nidhi Sahni Song Yi Analyn Yu Tanya Tyagi Cathy Tie David E. Hill Marc Vidal
... [+10 authors] ...,
Brenda J. Andrews
Charles Boone
Kara Dolinski
Frederick P. Roth

First Published March 14, 2016

Research

Microbiota modulate transcription in the intestinal epithelium without remodeling the accessible chromatin landscape

J. Gray Camp
Christopher L. Frank
Colin R. Lickwar
Harendra Guturu
Tomas Rube
Aaron M. Wenger
... [+1 authors] ...,
Jenny Chen
Gill Bejerano
Gregory E. Crawford
John F. Rawls

First Published June 24, 2014

Resource

PRISM offers a comprehensive genomic approach to transcription factor function prediction

Aaron M. Wenger
Shoa L. Clarke
Harendra Guturu
Jenny Chen
Bruce T. Schaar
Cory Y. McLean
Gill Bejerano

First Published February 4, 2013

Resource

C. elegans ORFeome" > Large-scale RACE approach for proactive experimental definition of C. elegans ORFeome

Kourosh Salehi-Ashtiani
Chenwei Lin
Tong Hao
Yun Shen
David Szeto
Xinping Yang Lila Ghamsari HanJoo Lee Changyu Fan Ryan R. Murray Stuart Milstein Nenad Svrzikapa
... [+7 authors] ...,
Michael E. Cusick
Frederick P. Roth
David E. Hill
Marc Vidal

First Published October 2, 2009

Resource

Analysis of the human E2 ubiquitin conjugating enzyme protein interaction network

Gabriel Markson
Christina Kiel
Russell Hyde
Stephanie Brown
Panagoula Charalabous
Anja Bremm Jennifer Semple Jonathan Woodsmith Simon Duley Kourosh Salehi-Ashtiani Marc Vidal
... [+6 authors] ...,
David Komander
Luis Serrano
Paul Lehner
Christopher M. Sanderson

First Published June 23, 2009

Methods

Shifted Transversal Design smart-pooling for high coverage interactome mapping

Xiaofeng Xin
Jean-François Rual
Tomoko Hirozane-Kishikawa
David E. Hill
Marc Vidal
Charles Boone
Nicolas Thierry-Mieg

First Published May 15, 2009

LETTER

Saccharomyces cerevisiae predicted ORFeome" > Revisiting the Saccharomyces cerevisiae predicted ORFeome

Qian-Ru Li
Anne-Ruxandra Carvunis
Haiyuan Yu
Jing-Dong J. Han
Quan Zhong
Nicolas Simonis Stanley Tam Tong Hao Niels J. Klitgord Denis Dupuy Danny Mou Ilan Wapinski
... [+7 authors] ...,
Aviv Regev
David E. Hill
Michael E. Cusick
Marc Vidal

First Published May 23, 2008

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